Job Description P37679 Confidence 46.84% Date Thu Jan 5 11:56:53 GMT 2012 Rank 353 Aligned Residues 120 % Identity 10% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.												.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																	.													.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																	.													.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		W	P	E	R	L	V	L	A	K	S	C	G	F	D	F	.	V	E	M	S	V	D	E	T	D	E	R	L	.	.	.	.	.	.	.	.	.	.	.	S	R	L	D	W	S	A	A	Q	R	T	S	L	V	A	A	M	I	E	T	.	G	V	G	I	P	S	M	C	L	S	A	H	R	R	F	P	F	G	S	R
Query Conservation																	.													.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																	.													.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		L	Q	R	L	N	K	V	A	G	E	L	G	V	K	A	P	I	S	L	R	I	N	P	D	V	D	A	K	T	H	P	Y	I	S	T	G	L	R	D	N	K	F	G	I	T	F	D	R	A	A	Q	V	Y	R	L	A	H	S	L	P	N	L	D	V	H	G	I	D	C	H	I	G	.	.	.	.	S	Q	L	T
Template Known Secondary structure													T									B						T	T	T											S	S		S	B		G	G	G											S	T	T												.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	E	A	V	R	E	R	A	R	E	I	M	S	K	A	I	R	L	A	R	D	L	G	I	R	T	I	Q	L	A	G	Y	D	V	Y	Y	E	D	H	D	E	G	T	R	Q	R	F	A	E	G	L	A	W	A	V	E	Q	A	A	A	S	.	Q	V	M	L	A	V	E	I
Query Conservation																																																															.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	A	P	F	I	D	A	T	D	R	L	L	A	L	I	D	S	L	K	A	E	G	I	H	I	R	H	L	D	V	G	G	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	A	K	A	L	L	D	R	L	E	R	H	R	D	L	E	L	I	F	E	P
Template Known Secondary structure		S																					T	T										S				.	.	.	.	.	.	.	.	.	.	.	.										G	G	G		T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.													.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions