Job Description P37679 Confidence 100.00% Date Thu Jan 5 11:56:53 GMT 2012 Rank 32 Aligned Residues 258 % Identity 16% Template c3aamA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 Resolution 1.58 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	I	Y	E	K	A	L	A	K	D	L	S	W	P	E	R	L	V	L	A	K	S	C	G	F	D	F	V	E	M	S	V	D	E	T	D	E	R	L	S	R	L	D	W	S	A	A	Q	R	T	S	L	V	A	A	M	I	E	T	G	V	G	I	P	S	M	C	L	S	A	H	R	R	F	P	F	G	S
Query Conservation
Alig confidence								.																																					.																																.	.	.
Template Conservation								.																																					.																																.	.	.
Template Sequence		R	Y	G	F	H	L	.	S	I	A	G	K	K	G	V	A	G	A	V	E	E	A	T	A	L	G	L	T	A	F	Q	I	F	A	K	S	P	R	S	W	R	P	R	.	A	L	S	P	A	E	V	E	A	F	R	A	L	R	E	A	S	G	G	L	P	A	V	I	H	A	S	Y	L	V	N	.	.	.	L	G
Template Known Secondary structure						B		.				S	T	T													T		S						S	S		T	T			S			.																	T	T										T	T			.	.	.	T	T
Template Predicted Secondary structure								.																																					.																																.	.	.
Template SS confidence
		3	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	E	A	V	R	E	R	A	R	E	I	M	S	K	A	I	R	L	A	R	D	L	G	I	R	T	I	Q	L	A	G	Y	D	V	Y	Y	E	D	H	D	E	G	T	R	Q	R	F	A	E	G	L	A	W	A	V	E	Q	A	A	A	S	Q	V	M	L	A	V	E	I	M	D	T	A	F	M	N	S	I	S
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.
Template Sequence		A	E	G	E	L	W	E	K	S	V	A	S	L	A	D	D	L	E	K	A	A	L	L	G	V	E	Y	V	V	V	H	P	G	S	G	R	.	.	.	.	.	.	.	P	E	R	V	K	E	G	A	L	K	A	L	R	L	A	G	V	R	S	R	P	V	L	L	V	E	N	T	A	G	G	G	E	K	V	G	A
Template Known Secondary structure			S	S	T																				T										B	S		.	.	.	.	.	.	.																T			S	S	S											T	T	B	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.										.	.	.	.	.
Query SS confidence																															.	.	.	.										.	.	.	.	.
Query Sequence		K	W	K	K	W	D	E	M	L	A	S	P	W	F	T	V	Y	P	D	V	G	N	L	S	A	W	G	N	D	.	.	.	.	V	P	A	E	L	K	L	G	I	.	.	.	.	.	D	R	I	A	A	I	H	L	K	D	T	Q	P	V	T	G	Q	S	P	G	Q	F	R	D	V	P	F	G	E	G	C	V	D
Query Conservation																															.	.	.	.										.	.	.	.	.
Alig confidence																															.	.	.	.										.	.	.	.	.																			.	.
Template Conservation																																																																			.	.
Template Sequence		R	F	E	E	L	A	W	L	V	A	D	T	P	L	Q	V	C	L	D	T	C	H	A	Y	A	A	G	Y	D	V	A	E	D	P	L	G	V	L	D	A	L	D	R	A	V	G	L	E	R	V	P	V	V	H	L	N	D	S	V	G	G	L	G	S	R	.	.	V	D	H	H	A	H	L	L	Q	G	K	I	G
Template Known Secondary structure		S									T	T	S	S														T			T	T	T													T		G	G	G										S	S		T	T			.	.							T	T	S	S	S	S	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		F	V	G	I	F	K	T	L	H	K	L	N	Y	R	G	.	S	F	L	I	E	M	W	T	E	K	A	K	E	P	V	L	E	I	I	Q	A	R	R	W	I	E	A	R	M	Q	E	A
Query Conservation																	.
Alig confidence		.															.						.	.	.	.	.
Template Conservation		.																					.	.	.	.	.
Template Sequence		.	E	G	L	K	R	V	F	L	D	P	R	L	K	D	R	V	F	I	L	E	.	.	.	.	.	T	P	R	G	P	E	E	D	A	W	N	L	R	V	F	R	A	W	L	E	E	A
Template Known Secondary structure		.	T							T		G	G	G	T	T	S						.	.	.	.	.	S			S																T	T
Template Predicted Secondary structure		.																					.	.	.	.	.
Template SS confidence
			229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions