Job Description P37679 Confidence 88.62% Date Thu Jan 5 11:56:53 GMT 2012 Rank 96 Aligned Residues 132 % Identity 9% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.												.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																	.													.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																	.													.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		W	P	E	R	L	V	L	A	K	S	C	G	F	D	F	.	V	E	M	S	V	D	E	T	D	E	R	L	.	.	.	.	.	.	.	.	.	.	.	S	R	L	D	W	S	A	A	Q	R	T	S	L	V	A	A	M	I	E	T	.	G	V	G	I	P	S	M	C	L	S	A	H	R	R	F	P	F	G	S	R
Query Conservation																	.													.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																	.													.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G	E	K	E	A	L	E	M	F	L	W	A	K	K	S	A	F	L	E	P	V	S	V	H	F	H	I	G	.	.	.	.	S	Q	L	L
Template Known Secondary structure													T									B								S		G	G	G	B			S	T	T	S	S	S	S	B																S	S											B	.	.	.	.	S	S	B
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	V	R	E	R	A	R	E	I	M	S	K	A	I	R	L	A	R	D	L	G	I	R	T	I	Q	L	A	G	Y	D	V	Y	Y	E	D	H	D	E	G	T	R	Q	R	F	A	E	G	L	A	W	A	V	E	Q	A	A	A	S	Q	V	M	L	A	V	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	E	P	I	I	E	A	S	Q	K	V	A	K	I	A	K	S	L	I	A	L	G	I	D	L	R	F	F	D	V	G	G	G	I	G	V	S	Y	E	N	E	E	T	I	K	L	Y	D	Y	A	Q	G	I	L	N	A	L	Q	G	L	D	L	T	I	I	C	E	P
Template Known Secondary structure																							T	T												B				T	T	S																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions