Job Description P37679 Confidence 88.27% Date Thu Jan 5 11:56:53 GMT 2012 Rank 101 Aligned Residues 243 % Identity 16% Template c1ydnA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. Resolution 2.30 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.																						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	K	D	L	S	W	P	E	R	L	V	L	A	K	S	C	.	.	.	G	F	D	F	V	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	D	E	T	D	E	R	L	S	R	L	D	W	S	A	A	Q	R	T	S	L	V	A	A	M	I	E	T	G	V
Query Conservation																				.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		N	E	K	R	F	V	P	T	A	D	K	I	A	L	I	N	R	L	S	D	C	G	Y	A	R	I	E	A	T	S	F	V	S	P	K	W	V	P	Q	L	A	D	S	R	E	V	X	A	G	I	R	R	A	D	G	V	R	Y	S	V	L	V	P	N	X	K	G	Y	E	A	A	A	A	.	.	.	.	A	H	A
Template Known Secondary structure		T	S	S	S															T	T	T	T		S								S		T	T	T		G	G	G	T	T								S				S	S	S							S	S										.	.	.	.	T	T
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	P	S	M	C	L	S	A	H	R	R	F	P	F	G	S	R	D	E	A	V	R	E	R	A	R	E	I	M	S	K	A	I	R	L	A	R	D	L	G	I	R	T	I	Q	L	A	G	Y	D	V	Y	Y	E	D	H	D	E	G	T	R	Q	R	F	A	E	G	L	A	W	A	V	E	Q	A	A	A	S	Q
Query Conservation
Alig confidence																						.																																																										.	.
Template Conservation																						.																																																										.	.
Template Sequence		D	E	I	A	V	F	I	S	A	S	E	G	F	S	K	A	N	I	N	C	.	T	I	A	E	S	I	E	R	L	S	P	V	I	G	A	A	I	N	D	G	L	A	I	R	G	Y	V	S	C	V	V	E	C	P	Y	D	G	P	V	T	P	Q	A	V	A	S	V	T	E	Q	L	F	S	L	G	C	H	.	.
Template Known Secondary structure		S								S									T	S	S	.																			T	T										S	S			T	T	T																			T		S	.	.
Template Predicted Secondary structure																						.																																																										.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	L	A	V	E	I	M	D	T	A	F	M	N	S	I	S	K	W	K	K	W	D	E	M	L	A	S	P	W	F	T	V	Y	P	D	V	G	N	L	S	A	W	G	N	D	V	P	A	E	L	K	L	G	I	D	R	I	A	A	I	H	L	K	D	T	Q	P	V	T	G	Q	S	P	G	Q	F	R	D	V
Query Conservation
Alig confidence		.	.	.																																																														.	.	.	.	.	.
Template Conservation		.	.	.																																																														.	.	.	.	.	.
Template Sequence		.	.	.	E	V	S	L	G	D	T	I	G	R	G	T	P	D	T	V	A	A	X	L	D	A	V	L	A	I	A	P	A	H	S	L	A	G	H	Y	H	D	T	G	G	R	A	L	D	N	I	R	V	S	L	E	K	G	L	R	V	F	D	A	S	.	.	.	.	.	.	V	G	G	L	G	G	C	P	F	A
Template Known Secondary structure		.	.	.							T	T	S																T	T	S		G	G	G						B		T	T	S													T							B	.	.	.	.	.	.	T	T			S		B	T	T	B
Template Predicted Secondary structure		.	.	.																																																														.	.	.	.	.	.
Template SS confidence
					171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	G	E	G	C	V	D	F	V	G	I	F	K	T	L	H	K	L	N	Y	R	G	S	F	L	I	E	M	W	T	E	K	A	K	E	P	V	L	E	I	I	Q	A	R	R	W	I	E	A	R	M	Q	E
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	A	K	G	N	V	D	T	V	A	V	V	E	X	L	H	E	X	G	F	E	.	.	.	.	.	.	.	.	.	.	.	T	G	L	D	L	D	R	L	R	S	A	G	L	F	T	Q	A	L	R	Q	D
Template Known Secondary structure		T	T	S			B		B											T	T		B	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.												.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions