Job Description P76250 Confidence 100.00% Date Wed Jan 25 15:21:06 GMT 2012 Rank 2 Aligned Residues 287 % Identity 26% Template c3t1bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	N	L	P	L	L	N	D	L	R	V	F	M	L	V	A	R	R	A	G	F	A	A	V	A	E	E	L	G	V	S	P	A	F	V	S	K	R	I	A	L	L	E	Q	T	L	N	V	V	L	L	H	R	T	T	R	R	V	T	I	T	E	E	G	E	R	I	Y	E	W	A	Q	R	I	L	Q	D	V	G
Query Conservation
Alig confidence				.	.	.	.
Template Conservation				.	.	.	.
Template Sequence		M	K	.	.	.	.	L	D	D	L	N	L	F	R	L	V	V	E	N	G	S	Y	T	S	T	S	K	K	T	M	I	P	V	A	T	I	T	R	R	I	Q	A	L	E	D	S	L	N	L	R	L	L	N	R	H	A	R	K	L	T	L	T	E	A	G	E	R	F	Y	K	D	C	S	P	L	L	E	R	L	A
Template Known Secondary structure				.	.	.	.														S	S																											T								S	S	S
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		1	.					.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	M	D	E	L	S	D	V	R	Q	V	P	Q	G	M	L	R	I	I	S	S	F	G	F	G	R	Q	V	V	A	P	A	L	L	A	L	A	K	A	Y	P	Q	L	E	L	R	F	D	V	E	D	R	L	V	D	L	V	N	E	G	V	D	L	D	I	R	I	G	D	D	I	A	P	N	L	I	A	R	K
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		S	M	T	E	E	I	T	D	E	C	R	G	A	S	G	R	I	R	I	S	A	P	S	E	L	T	K	R	M	M	M	P	M	F	N	A	F	M	E	K	Y	P	D	I	H	I	E	L	M	M	S	N	Q	.	A	D	L	D	P	T	E	W	D	V	I	F	R	V	G	P	Q	R	D	S	S	L	I	A	R	K
Template Known Secondary structure											S			S										T	T	T	T	T	T	T													T	T									S	S	.					S	T	T		S						S							S
Template Predicted Secondary structure																																																							.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	N	Y	R	I	L	C	A	S	P	E	F	I	A	Q	H	G	A	P	K	H	L	T	D	L	S	A	L	P	C	L	V	I	K	E	R	D	H	P	F	G	V	W	Q	L	R	N	K	E	G	P	H	A	I	K	V	T	G	P	L	S	S	N	H	G	E	I	V	H	Q	W	C	L	D	G	Q	G	I
Query Conservation
Alig confidence																																														.	.	.
Template Conservation																																														.	.	.
Template Sequence		I	G	E	V	K	D	I	L	V	A	S	P	Q	Y	L	S	S	H	P	Q	P	T	H	A	E	E	L	H	Q	H	Q	L	L	K	G	Y	P	L	L	K	W	Q	L	T	.	.	.	N	S	Q	G	E	T	V	V	N	S	D	R	G	R	F	Q	A	S	A	L	N	V	V	R	S	A	C	S	E	G	L	G	I
Template Known Secondary structure																			S				S	S	G	G	G	G	G	G	S						T	T			S					.	.	.		T	T	S										S				S	S										T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	L	R	S	W	W	D	V	S	E	N	I	A	S	G	H	L	V	Q	V	.	L	P	E	Y	Y	Q	P	A	N	V	W	A	V	Y	V	S	R	L	A	T	S	A	K	V	R	I	T	V	E	F	L	R	Q	Y	F
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		T	L	M	P	D	V	M	L	R	E	F	L	E	D	G	S	L	V	Q	V	L	S	D	W	S	S	N	P	R	D	I	Y	M	L	Y	N	H	K	D	H	Q	P	E	K	V	R	L	F	I	D	F	V	I	G	Y	H
Template Known Secondary structure						G	G	G	T							T	S	S					T	T		B														S	S															S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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