Job Description P76250 Confidence 99.94% Date Wed Jan 25 15:21:06 GMT 2012 Rank 8 Aligned Residues 176 % Identity 14% Template c1b9nA_ PDB info PDB header:transcription Chain: A: PDB Molecule:protein (mode); PDBTitle: regulator from escherichia coli Resolution 2.09 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	N	L	P	L	L	N	D	L	R	V	F	M	L	V	A	R	R	A	G	F	A	A	V	A	E	E	L	G	V	S	P	A	F	V	S	K	R	I	A	L	L	E	Q	T	L	N	V	V	L	L	H	R	T	T	R	R	V	T	I	T	E	E	G	E	R	I	Y	E	W	A	Q	R	I	L	Q	D	V	G
Query Conservation
Alig confidence				.	.	.	.																																																	.
Template Conservation				.	.	.	.																																																	.
Template Sequence		A	D	.	.	.	.	P	R	R	I	S	L	L	K	H	I	A	L	S	G	S	I	S	Q	G	A	K	D	A	G	I	S	Y	K	S	A	W	D	A	I	N	E	M	N	Q	L	S	E	H	I	L	V	E	R	.	A	T	G	A	V	L	T	R	Y	G	Q	R	L	I	Q	L	Y	D	L	L	A	Q	I	Q	Q
Template Known Secondary structure				.	.	.	.														S	S									T																		T	S						.
Template Predicted Secondary structure				.	.	.	.																																																	.
Template SS confidence
		17	.					.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		Q	M	M	D	E	L	S	D	V	R	Q	V	P	Q	G	M	L	R	I	I	S	S	F	G	F	.	.	.	.	G	R	Q	V	V	A	P	A	L	L	A	L	A	K	A	Y	P	Q	L	E	L	R	F	D	V	E	D	R	L	V	D	L	V	N	E	G	V	D	L	D	I	R	I	G	D	D	I	A	P	N	L
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		K	A	F	D	V	L	S	D	D	D	A	L	P	L	N	S	L	L	A	A	I	S	R	F	S	L	Q	T	S	A	R	N	Q	W	F	G	T	I	T	A	R	D	H	D	D	V	Q	Q	H	V	D	V	L	L	A	D	G	K	T	R	L	K	V	A	I	T	A	Q	S	G	A	R	L	G	L	D	E	G	K	E
Template Known Secondary structure												S	S		T	T										T				T	T	S											S	S	S	S			S							T	T	S																T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	R	K	L	A	T	N	Y	R	I	L	C	A	S	P	E	F	I	A	Q	H	G	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	I	L	L	K	A	P	W	V	G	I	T	Q	D	E	A	V	A	Q	N	A	D	N	Q
Template Known Secondary structure								G	G	G					S							T	S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions