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Job DescriptionP0AC41
Confidence99.68%DateThu Jan 5 11:17:07 GMT 2012
Rank67Aligned Residues242
% Identity24%Templatec3ic9D_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.... .....50.........60....
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Query Sequence  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS. . . . . . . . . . . . . . . . . . HTVSAQGGITVALGNTHEDN
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Template Sequence  XKVINVDVAIIGTGTAGXGAYRAAKKHTDKVVLIEGGAYGTTCARVGCXPSKLLIAAADASYHASQTDLFGIQVDRISVN
Template Known Secondary structure 


STT
S
SS
SS
ST
GGGGT


S




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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   65....70.........80.........90.
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Query Sequence  WEWHMYDTVKGSDYIGDQDAIEYMCKT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                             
           
        
Template Sequence  GKAVXKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLT
Template Known Secondary structure  S
GGGS
TTTTT






TTGGG
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   92.......100.........110.........120.........130.........140.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . GPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTL
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Template Sequence  NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ. . . . . . . . . . . . . . . . . . . . . . DEEXKRYA
Template Known Secondary structure  TT
SS

S

STT

SSS

TT

......................S
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   161........170.........180.........190.........200.........210 ........
 
   150.........160.........170.........180.........190.........200.........210.........220.........
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Query Sequence  YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRA
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Template Sequence  EKTFNEEFYFDAKARVISTIEKEDA. . . . VEVIYFDKSGQKTTESFQYVLAATG. . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTSTT

SSS....
TTS
S
S
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   219220.........230.........240... ......250.........260........
 
   230.........240.........250.........260.........270.........280.........290.........300.........
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Query Sequence  GVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
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   310.........320.........330.........340.........350.........360.........370.........380.........
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Query Sequence  HAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RKANVDKLGLENTSIELDKKNS. PLFDELTLQTSVDHIFVAGDA
Template Known Secondary structure  ....................................
TTSSS
GGGS


B
TTS
.B
B
TTT
BBSSTT
GGG
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   269270.........280.........290 .........300.........310.
 
   390.........400.........410.........420..
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Query Sequence  ACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES
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Template Sequence  NNTLT. . . . . . . . . LLHEAADDGKVAGTNAGAY
Template Known Secondary structure  GTSS
.........ST
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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