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Job DescriptionP0AC41
Confidence100.00%DateThu Jan 5 11:17:07 GMT 2012
Rank7Aligned Residues561
% Identity19%Templatec3gyxA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30 .........40.........50.........60.........70.....
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Query Sequence  KLPVREFDAVVIGAGGAGMRAALQISQSG. . . . . . QTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKG
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Template Sequence  IIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGA. . VAQGLSAINTYLGDNNADDYVRMVRTD
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   1920.........30.........40.........50.........60......... 70.........80.........90......
 
   76...80.........90.........100.........110.........120.. .......130.........140.........150.
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Query Sequence  SDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQ. . . . SKNFGGEQAARTAAAADRTGHALLHTLYQ
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Template Sequence  LMGLVREDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAE
Template Known Secondary structure  TTT


T

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SSS

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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   152..... ..160.........170.... .....180.........190.........200.........210... .....
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Query Sequence  QNLKNH. . TTIFSEWYALDLVKNQD. . GAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTT. . . . . . . . . NAHIN
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Template Sequence  AAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRPRSVGEGMGRAWYPVWN
Template Known Secondary structure 
TTT
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SSSTTBSSSS

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SGGGG

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   177..180.........190.........200.........210.........220.........230.........240.........250......
 
   219220.........230.........240.........250.........260.........270.........280. .......
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Query Sequence  TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAK. . . . . . . . . . DLAGRDV
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Template Sequence  AGSTYTMCAQVGAEMTMMENRFVPARFKDGYGP. VGAWFLLFKAKATNCKGEDYCATNRAMLKPYEERGYAKGHVIPTCL
Template Known Secondary structure  BSTTT

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TTS

TGGGGTTTSSTTT


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   257..260.........270.........280......... 290.........300.........310.........320.........330.....
 
   289290.........300.. .......310.........320.........330........ .340.........350.......
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Query Sequence  VARSIMIEIREGRG. CDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFA. . . . . . . . . . HVDPVKEPIPVIPTCHYMM
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Template Sequence  RNHMMLREMREGRGPIYMDTKTALQTSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPEERGSEIMPTEPYLL
Template Known Secondary structure  TTT




TTTS
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   336...340.........350.........360.........370.........380.........390.........400.........410.....
 
   358. 360.........370.........380.........390.........400.........410.......
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Query Sequence  GG. . . . . . . . . . . . . . . . . . . . IPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGL
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Template Sequence  GSHSGCCGIWASGPDEAWVPEDYKVRAANGKVYNRM. . . . TTVEGLWTCADGVGAS. . . . . . . GHKFSSGSHAEGRIVGK
Template Known Secondary structure  SSSS









TTS
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   416...420.........430.........440.........450. ........460....... ..470.........480....
 
   418.420.........430.........440.........450 .........460.........470.... ....
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Query Sequence  HLQESIAEQGALRDASESDVEASLDRLNRWNNN. . . . . . . . . . . . . . RNGEDPVAIRKALQECMQHNFSVF. . . . . REGD
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Template Sequence  QMVRWYLDHKDFKPEFVETAEELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIKCTDEYGGGVGTYYNTSKA
Template Known Secondary structure  T
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SS
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SSSSS
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   485....490.........500.........510.........520.........530.........540.........550.........560....
 
   479480.........490.........500.........510.........520.........530....... ..540.........550......
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Query Sequence  AMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESR. . GAHSRFDFPDRDDENWLCH
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Template Sequence  LLDTGFWLMEMLEEDSLKLAARDLH. . . . . ELLRCWENYHRLWTVRLHMQHIAFREESRYPGFYYRADFLGLDDSKWKCF
Template Known Secondary structure  GGGB

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   565....570.........580......... 590.........600.........610.........620.........630.........
 
   557..560.........570.........580....
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Query Sequence  SLYLPESESMTRRSVNMEPKLRPAFPPK
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Template Sequence  VNSKYDPAKK. . . ETKIFKKPYYQIIPD
Template Known Secondary structure  TTTT...




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   640......... 650.........660....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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