Return to main results Retrieve Phyre Job Id

Job DescriptionP0AC41
Confidence99.97%DateThu Jan 5 11:17:07 GMT 2012
Rank29Aligned Residues412
% Identity16%Templatec3g05B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
Resolution3.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI
Query Conservation     





 
 


 

  

  
  
 



    

 
  
 

          
  
    
            

Alig confidence 















































........................







Template Conservation    








 


 

  


 
 





      
   

 
 
........................
   
 
 
Template Sequence  DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIG. . . . . . . . . . . . . . . . . . . . . . . . GIGKGHLV
Template Known Secondary structure  SS
ST


S
TTTTT


SSS........................STT
Template Predicted Secondary structure 


























........................


Template SS confidence 















































































   5....10.........20.........30.........40.........50.. .......60
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY
Query Conservation            
  
   

 
     
                    
        
      
       

 
     
Alig confidence 







































................























Template Conservation   
   
 
      
   
    

     
        
................       
   
       
    
Template Sequence  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQAD. . . . . . . . . . . . . . . . RVLYRQAVRTALENQPNLMIFQQA
Template Known Secondary structure  TT
STTBS


STTS
GGG
B
................TT
TT



Template Predicted Secondary structure 






















................


Template SS confidence 















































































   61........70.........80.........90.........100 .........110.........120....
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  ALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTG
Query Conservation     

    
 
 

       
    
 
  






              



  

  


 
  

     
  
Alig confidence 






.












.....




















....









.







..







Template Conservation 
  
   .   
 

    
 ..... 
 









        ....

 


  
 .  
     ..  


 

Template Sequence  VEDLIVE. NDRVVGAVTQMGL. . . . . KFRAKAVVLTVGTFLDGKIHI. . . . GSIPLSRRLR. ELPLRVGR. . LKTGTPPR
Template Known Secondary structure  S.SSBTTS
.....


S


S
....


.SS

..





Template Predicted Secondary structure  .





.....













....



.



..






Template SS confidence 















































































   125....130. ........140.... .....150.........160..... ....170..... ....180... ......190.
 
   246...250.........260. ........270.........280.........290.........300.........310....
Predicted Secondary structure 











...


























........
Query SS confidence 















. . .




















































. . . . . . . .
Query Sequence  IAGAGVLVTEGCRGEG. . . GYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLK. . . . . . . .
Query Conservation        
        
...  


  
 

          
  

     
  
   
             
........
Alig confidence 















...




















































........
Template Conservation 
   

         

     

                  
      

       



 
  

       
 


Template Sequence  IDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPSIEDKVMRFADRNQHQIFLEP
Template Known Secondary structure  GGGS

SSSB




SS


SSSS

STT








TT



SSSTTTSS
TTS

Template Predicted Secondary structure 



































Template SS confidence 















































































   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   315....320.........330.........340.........350.........360...... ...370.........380
Predicted Secondary structure  .............




















.








Query SS confidence  . . . . . . . . . . . . .



















































.













Query Sequence  . . . . . . . . . . . . . LDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTG. QALTVNEKGEDVVV
Query Conservation  .............      
 
                 
       
 
    
 


 

   . 
         
 
Alig confidence  .............















.................


















.













Template Conservation 


        
 
  

   
  
   
.................



 
 
   
  

 
 


  
  




 
Template Sequence  EGLTSNEIYPNGISTSLPFDVQMQIVRSM. . . . . . . . . . . . . . . . . QGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFI
Template Known Secondary structure  S
TT

S



S
S.................TT
TT





GGGB
TT

BSSS
Template Predicted Secondary structure 














.................





















Template SS confidence 















































































   300.........310.........320........ .330.........340.........350.........360..
 
   381........390.........400.........410.........420.........430..... ....440.........450.
Predicted Secondary structure 

























.........




Query SS confidence 






















































. . . . . . . . .















Query Sequence  PGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASES. . . . . . . . . DVEASLDRLNRWNNNR
Query Conservation 







 

    
  

 
 

    
 
  

  

               .........                
Alig confidence 










..


........






























.........















Template Conservation   


 



 
..
 
........
 





 






            
     
  



   
  




 


Template Sequence  QGLFFAGQING. . TTG. . . . . . . . YEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSR
Template Known Secondary structure  BT
STTTT..


........TTT






TTT
TSS


TTT
Template Predicted Secondary structure 




..........












Template SS confidence 















































































   363......370... ... ...380.........390.........400.........410.........420.........430..
 
   452... ....460.........470 .........480.........490........
Predicted Secondary structure 



..
.



Query SS confidence 



. .














.



























Query Sequence  NGED. . PVAIRKALQECMQHN. FSVFREGDAMAKGLEQLKVIRERLKNAR
Query Conservation      ..       
   
   .    
    
  

  
  
        
Alig confidence 



..














.



.






















Template Conservation   
 

 

 



 

       
  .                     
 
Template Sequence  AEYRLMLREDNADLRLTEIGRELGLV. DDERWARFNEKLENIERERQRLK
Template Known Secondary structure 
S

GGGT

.
TTT
Template Predicted Secondary structure 








.
Template SS confidence 

















































   433......440.........450........ .460.........470.........480.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions