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Job DescriptionP0AC41
Confidence99.50%DateThu Jan 5 11:17:07 GMT 2012
Rank124Aligned Residues289
% Identity20%Templatec3d8xB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE
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Template Sequence  HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

STT




SSGGG

TT
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   3......10.........20.........30.........40......
 
   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVS
Template Known Secondary structure  ......................................GG
S

STT
TT
TT



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   47..50.........60.........70.........80........
 
   167..170.........180.........190.........200... ......210.........220
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Query Sequence  LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATG. . . . . . . . . . . . . . . . . . . . . . . . . . GAGRIYQSTTNAHINTG
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Template Sequence  KVDLSSKP. . . . . FKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGG
Template Known Secondary structure 
SSSS.....TT
TTS









TTBTTTS
TTSGGGTTS
SS
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   8990...... ...100.........110.........120.........130.........140.........150.........160...
 
   221........230.........240.........250.........260.........270.........280.........290.........300
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Query Sequence  DGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREG
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Template Sequence  DSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNE. . . . . . . .
Template Known Secondary structure  TTTSS
SSSS

S

TT
SSSSSTTTT........
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   164.....170.........180.........190.........200.........210.........220.........230.....
 
   301........310.........320.........330.........340.........350.........360.........370.........380
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Query Sequence  RGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGY. IKTVPGSSLTSV
Template Known Secondary structure  ..................................
S
S


GGGTTTS
B
TTS
.B


TTS


SS
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   236...240.........250.........260........ .270.........280
 
   381........390.........400.........410.........420.....
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Query Sequence  PGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAE
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Template Sequence  PGFFAAGDVQDSKYRQ. . . . . . . . AITSAGSGCMAALDAEKYLTS
Template Known Secondary structure  TT
GGGG
SS


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   281........290...... ...300.........310.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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