Job Description P0AC41 Confidence 99.93% Date Thu Jan 5 11:17:07 GMT 2012 Rank 35 Aligned Residues 348 % Identity 17% Template c3cp8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum Resolution 3.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	V	V	I	G	A	G	G	A	G	M	R	A	A	L	Q	I	S	Q	S	G	Q	T	C	A	L	L	S	K	V	F	P	T	R	S	H	T	V	S	A	Q	G	G	I	T	V	A	L	G	N	T	H	E	D	N	W	E	W	H	M	Y	D	T	V	K	G	S	D	Y	I	G	D	Q	D	A	I	E	Y
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	I	V	V	G	A	G	H	A	G	C	E	A	A	L	A	V	A	R	G	G	L	H	C	L	L	I	T	S	D	L	S	A	V	A	R	M	S	C	N	P	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	A	K	G	Q	I	T	R	E
Template Known Secondary structure										S													T	T								S		G	G	G	T	T			S	S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																									.	.	50	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	C	K	T	G	P	E	A	I	L	E	L	E	H	M	G	L	P	F	S	R	L	D	D	G	R	I	Y	Q	R	P	F	G	G	Q	S	K	N	F	G	G	E	Q	A	A	R	T	A	A	A	A	D	R	T	G	H	A	L	L	H	T	L	Y	Q	Q	N	L	K	N	H	T	T	I	F	S	E	W	Y	A	L
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	A	L	G	G	E	M	G	K	A	I	D	A	T	G	I	Q	F	R	M	L	N	R	S	K	G	P	A	M	H	S	P	R	A	Q	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	Q	Y	S	L	Y	M	R	R	I	V	E	H	E	P	N	I	D	L	L	Q	D	T	V	I
Template Known Secondary structure						T		S																	S	S	S		T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T		T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.											.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	V	K	N	Q	D	G	A	V	V	G	C	T	A	L	C	I	E	T	G	E	V	V	Y	F	K	A	R	A	T	V	L	A	T	G	G	A	G	R	I	.	.	.	.	.	.	.	.	.	.	Y	Q	S	T	T	N	A	H	I	N	T	G	D	G	V	G	M	A	I	R	A	G	V	P	V	Q	D	M	E
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence							.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.																			.
Template Conservation							.														.	.	.	.	.																																														.
Template Sequence		G	V	S	A	N	.	S	G	K	F	S	S	V	T	V	R	S	G	R	.	.	.	.	.	A	I	Q	A	K	A	A	I	L	A	C	G	T	F	L	N	G	L	I	H	I	G	M	D	H	F	P	G	G	R	S	T	A	E	P	P	V	E	G	L	T	E	S	L	A	.	S	L	G	F	S	F	G	R	L	K
Template Known Secondary structure							.	T	T								T	T	S		.	.	.	.	.												T	T		B	T						T	T						S	S	S	T	T	S			B		S							.		T	T
Template Predicted Secondary structure							.														.	.	.	.	.																																														.
Template SS confidence
		122	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																								.																																																								.	.
Query SS confidence																								.																																																								.	.
Query Sequence		M	W	Q	F	H	P	T	G	I	A	G	A	G	V	L	V	T	E	G	C	R	G	.	E	G	G	Y	L	L	N	K	H	G	E	R	F	M	E	R	Y	A	P	N	A	K	D	L	A	G	R	D	V	V	A	R	S	I	M	I	E	I	R	E	G	R	G	C	D	G	P	W	G	P	H	A	K	L	K	.	.
Query Conservation																								.																																																								.	.
Alig confidence																								.																																																								.	.
Template Conservation
Template Sequence		T	G	T	P	P	R	I	D	S	R	S	V	D	Y	T	I	V	T	E	Q	P	G	D	V	D	P	V	P	F	S	F	S	S	T	S	V	A	N	R	N	L	V	S	C	Y	L	T	K	T	T	E	K	T	H	D	I	L	R	T	G	F	D	R	S	P	L	F	T	G	C	P	S	I	E	D	K	I	S	R	F
Template Known Secondary structure										G	G	G	S		T	T	T	S							S	S				S	S	S	S					G	G	G																				T	T	T	T	T		T	T							S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
																											315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	H	L	G	K	E	V	L	E	S	R	L	P	G	I	L	E	L	S	R	T	F	A	H	V	D	P	V	K	E	P	I	P	V	I	P	T	C	H	Y	M	M	G	G	I	P	T	K	V	T	G	.	Q	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	K	S	S	H	H	I	F	L	E	P	E	G	T	D	T	V	E	M	Y	V	N	G	F	S	T	S	L	P	E	D	I	Q	I	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	I	P	G	L	E	E	A	K	M	I	R	P	G	Y	A	I	E	Y	D	F	F	H	P
Template Known Secondary structure			S		S									S	S	T	T								T					S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	T	T		T	T																	G
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.																		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	V	N	E	K	G	E	D	V	V	V	P	G	L	F	A	V	G	E	I	A	C	V	S	V	H	G	A	N	R	L	G	G	N	S	L	L	D	L	V	V	F	G	R	A	A	G	L	H	L	Q	E	S	I	A	E	Q	G	A	L
Query Conservation
Alig confidence																									.	.				.	.	.	.	.	.	.	.
Template Conservation																									.	.				.	.	.	.	.	.	.	.
Template Sequence		W	Q	I	R	S	T	M	E	T	R	P	V	E	N	L	F	F	A	G	Q	I	N	G	.	.	T	S	G	.	.	.	.	.	.	.	.	Y	E	E	A	A	A	Q	G	L	M	A	G	I	N	A	V	R	K	I	L	G	K	E	L	I
Template Known Secondary structure		G	G	B		T	T	S	B	B	S	S	S	B	T					S	G	G	G	T	.	.	B			.	.	.	.	.	.	.	.																					T
Template Predicted Secondary structure																									.	.				.	.	.	.	.	.	.	.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.									.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.