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Job DescriptionP0AC41
Confidence99.55%DateThu Jan 5 11:17:07 GMT 2012
Rank106Aligned Residues331
% Identity15%Templatec3cgvA_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:geranylgeranyl reductase related protein; PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI
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Template Sequence  ETYDVLVVGGGPGGSTAARYAAKYGLKTLXIEKRPEIGSPVRCGEGLS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   2.......10.........20.........30.........40.........
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY
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Template Sequence  . . . . . . . . . . KGILNEADIKADRSFIAN. EVKGARIYGPSEKRPIILQNEVGYVLERDKFDKHLAALAAKAGADVWVKSP
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   50.........60....... ..70.........80.........90.........100.........110........
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  ALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTG
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Template Sequence  ALGVIKENGKVAGAKIR. . . HNNEIVDVRAKXVIAADGFESEFGRWAGLKSVIL. . . . . . . . ARNDIISALQYRXINVDV
Template Known Secondary structure  TT...TT


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   124.....130.........140 .........150.........160.........170.... .....180.........190..
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  IAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLES
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Template Sequence  DPDYTDFYLGSIAPAGYIWVFPKGEGXANVGIGSSINWIHNRFELKNYLDRFIENHP. . . . . . . . . . . . . . . . . . . . . . .
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   193......200.........210.........220.........230.........240.........
 
   326...330.........340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  RLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLKKGQDIQLVTGGVSVSKVKXPITXPGLXLVGDAARL. . . . IDPITGGGI
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   250.........260.........270.........280....... ..290......
 
   406...410.........420.........430.........440......
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Query Sequence  LDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNR
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Template Sequence  ANAIVSGXYAAQVTKEAIESNDYSPQXXQKYEKLIKERFER
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   297..300.........310.........320.........330.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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