Job Description P0AC41 Confidence 99.97% Date Thu Jan 5 11:17:07 GMT 2012 Rank 28 Aligned Residues 450 % Identity 16% Template c3cesB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme Resolution 2.41 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	F	D	A	V	V	I	G	A	G	G	A	G	M	R	A	A	L	Q	I	S	Q	S	G	Q	T	C	A	L	L	S	K	V	F	P	T	R	S	H	T	V	S	A	Q	G	G	I	T	V	A	L	G	N	T	H	E	D	N	W	E	W	H	M	Y	D	T	V	K	G	S	D	Y	I	G	D	Q	D	A	I
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	G	I	G	K	G	H	L	V
Template Known Secondary structure		S			S							S													T	T								S		G	G	G	T	T			S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																									.	.	.	.	.	.	.	.	.	60
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	M	C	K	T	G	P	E	A	I	L	E	L	E	H	M	G	L	P	F	S	R	L	D	D	G	R	I	Y	Q	R	P	F	G	G	Q	S	K	N	F	G	G	E	Q	A	A	R	T	A	A	A	A	D	R	T	G	H	A	L	L	H	T	L	Y	Q	Q	N	L	K	N	H	T	T	I	F	S	E	W	Y
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A
Template Known Secondary structure							T	T		S																S	T	T	S		T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T		T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100																	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	L	V	K	N	Q	D	G	A	V	V	G	C	T	A	L	C	I	E	T	G	E	V	V	Y	F	K	A	R	A	T	V	L	A	T	G	G	A	G	R	I	Y	Q	S	T	T	N	A	H	I	N	T	G	D	G	V	G	M	A	I	R	A	G	V	P	V	Q	D	M	E	M	W	Q	F	H	P	T	G
Query Conservation
Alig confidence									.														.	.	.	.	.																					.	.	.	.													.								.	.
Template Conservation									.														.	.	.	.	.																					.	.	.	.													.								.	.
Template Sequence		V	E	D	L	I	V	E	.	N	D	R	V	V	G	A	V	T	Q	M	G	L	.	.	.	.	.	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I	H	.	.	.	.	I	G	S	I	P	L	S	R	R	L	R	E	.	L	P	L	R	V	G	R	.	.	L	K	T	G	T	P	P	R
Template Known Secondary structure								S	.	S	S	B							T	T	S		.	.	.	.	.					S							S	G	G	G						.	.	.	.													.	T	T						.	.
Template Predicted Secondary structure									.														.	.	.	.	.																					.	.	.	.													.								.	.
Template SS confidence
		125	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.			.	.	.	.	.	.	190	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																		.	.	.																																			.	.	.	.																				.	.	.	.
Query SS confidence																		.	.	.																																			.	.	.	.																				.	.	.	.
Query Sequence		I	A	G	A	G	V	L	V	T	E	G	C	R	G	E	G	.	.	.	G	Y	L	L	N	K	H	G	E	R	F	M	E	R	Y	A	P	N	A	K	D	L	A	G	R	D	V	V	A	R	S	I	M	I	.	.	.	.	E	I	R	E	G	R	G	C	D	G	P	W	G	P	H	A	K	L	K	.	.	.	.
Query Conservation																		.	.	.																																			.	.	.	.																				.	.	.	.
Alig confidence																		.	.	.																																			.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T
Template Known Secondary structure				G	G	G	S		G	G	G	S							S	S				S	S	T	T			G	G	G	S																									T					T	T	S		T	T										S		T	T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
											315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																					.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																					.
Query Sequence		.	.	.	.	.	.	.	.	.	L	D	H	L	G	K	E	V	L	E	S	R	L	P	G	I	L	E	L	S	R	T	F	A	H	V	D	P	V	K	E	P	I	P	V	I	P	T	C	H	Y	M	M	G	G	I	P	T	K	V	T	G	.	Q	A	L	T	V	N	E	K	G	E	D	V	V	V	P	G	L	F
Query Conservation		.	.	.	.	.	.	.	.	.																																																					.
Alig confidence		.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F
Template Known Secondary structure									T				S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T		T	T																	G	G	G	B		T	T	S	B	B	S	S	S	B	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.														.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	G	E	I	A	C	V	S	V	H	G	A	N	R	L	G	G	N	S	L	L	D	L	V	V	F	G	R	A	A	G	L	H	L	Q	E	S	I	A	E	Q	G	A	L	R	D	A	S	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	E	A	S	L	D	R	L	N	R	W	N	N	N	R
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.				.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.				.	.	.	.	.	.	.	.
Template Sequence		F	A	G	Q	I	N	G	.	.	T	T	G	.	.	.	.	.	.	.	.	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	A	D	K	E	G	W	A	P	A	R	S	Q	A	Y	L	G	V	L	V	D	D	L	C	T	L	G	T	K	E	P	Y	R	M	F	T	S	R	A	E	Y	R
Template Known Secondary structure				G	G	G	G	T	.	.				.	.	.	.	.	.	.	.																				T	T								T	T	T														S	S				G	G	G						T	T	T
Template Predicted Secondary structure									.	.				.	.	.	.	.	.	.	.
Template SS confidence
		367	.	.	370	.	.	.			.	.	.									.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	D	P	V	A	I	R	K	A	L	Q	E	C	M	Q	H	N	F	S	V	F	R	E	G	D	A	M	A	K	G	L	E	Q	L	K	V	I	R	E	R	L	K	N	A	R	L	D	D	T	S	S	E	F	N	T	Q	R	V	E	C	L	E	L	D	N	L	M	E	T	A	Y	A	T	A	V	S	A	N
Query Conservation
Alig confidence																				.					.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.					.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	L	R	E	D	N	A	D	L	R	L	T	E	I	G	R	E	.	L	G	L	V	.	D	D	E	R	W	A	R	F	N	E	K	L	E	N	I	E	R	E	R	Q	R	L	K	S	T	W	V	T	P	S	A	E	A	A	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	H
Template Known Secondary structure		S	S			G	G	G												.		T			.																					T	T	T	S					S	S	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.					.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.																	.	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	T	E	S	R	G	A	H	S	R	F	D	F	P	D	R	D	D	E	N	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	A	P	L	S	R	E	A	S	G	E	D	L	L	R	R	P	E	M	T	Y
Template Known Secondary structure		S	S	S				S				T	T	S	S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520