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Job DescriptionP0AC41
Confidence100.00%DateThu Jan 5 11:17:07 GMT 2012
Rank2Aligned Residues579
% Identity54%Templatec1yq4A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
Resolution2.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI
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Template Sequence  HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI
Template Known Secondary structure 
S

STT

SS
GGGSGGGG

S




SSS


TTT
S
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   17..20.........30.........40.........50.........60.........70.........80.........90......
 
   86...90.........100.........110.........120... ......130.........140.........150.........160....
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Query Sequence  EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQS. KNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW
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Template Sequence  HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEY
Template Known Secondary structure  TT



B
TTSSB


TT
BSGGGTS
B



STT
TTS

T
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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   165....170.........180.........190.........200.........210.........220.........230.........240....
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Query Sequence  YALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPT
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Template Sequence  FALDLLME. NGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPT
Template Known Secondary structure  .TTTTTT
S




GGGSSSBSS
TT


T


TT
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   177..180.... .....190.........200.........210.........220.........230.........240.........250.....
 
   245....250.........260.........270.........280.........290.........300.........310.........320....
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Query Sequence  GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLE
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Template Sequence  GIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPEK. DHVYLQLHHLPPQQLA
Template Known Secondary structure  TTT

B

TTT

TTS

TSTTTGGGS
TTT
BTTTT.
B
TTS
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   256...260.........270.........280.........290.........300.........310........ .320.........330....
 
   325....330.........340.........350.........360.........370.........380.........390.........400....
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Query Sequence  SRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNS
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Template Sequence  TRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVITHVNG. EDKVVPGLYACGEAASASVHGANRLGANS
Template Known Secondary structure 



TTTS
S
BB
TTSTT.
GGG
SSSTTS

TTS
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   335....340.........350.........360.........370.........380.... .....390.........400.........410...
 
   405....410.........420.........430.........440.........450.........460.........470.........480....
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Query Sequence  LLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGL
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Template Sequence  LLDLVVFGRACALTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGC
Template Known Secondary structure 

TT






TTTT
BSSSSS
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   414.....420.........430.........440.........450.........460.........470.........480.........490...
 
   485....490.........500.........510.........520.........530.........540.........550
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Query Sequence  EQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDD. . . . . . . . . . . . . .
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Template Sequence  EKLSQIYRDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKLRIDEFDYSKPLQGQQKR
Template Known Secondary structure  GGGG




STT


S
BTTBTTB
S


SS
TTS

TT



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   494.....500.........510.........520.........530.........540.........550.........560.........570...
 
   551........560.........570....... ..580........
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Query Sequence  . . . ENWLCHSLYLPESESMTRRSVNMEPKL. . . . . . . . RPAFPPKIRTY
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Template Sequence  PFEEHWRKHTLSYVDVKS. GKVTLKYRPVIDRTLNEEDCSSVPPAIRSY
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GGGS

TTT.T




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   574.....580.........590. ........600.........610.........620.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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