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Job DescriptionP0AC41
Confidence99.76%DateThu Jan 5 11:17:07 GMT 2012
Rank49Aligned Residues262
% Identity26%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGD. . . .
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Template Sequence  KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG. TCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI
Template Known Secondary structure 

STT

SSSSSS.SSSGGGT


SS



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   4.....10.........20.........30.........40.. .......50.........60.........70.........80..
 
   82.......90.........100.........110.........120........
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Query Sequence  . . . . . QDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGG. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPG
Template Known Secondary structure 
TT
SSSSS

SS
TT

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TT
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   129130.........140.........150.........160.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EQAARTAAAADRTGHALLHTLYQQNLKNHTTIF
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Template Sequence  IEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFK
Template Known Secondary structure 


BTTT
TT
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S

STT

SSSSSSSSS
TT
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  SEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQF
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Template Sequence  LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG. . . . . RRPYIAGLGAEKIGLEVDKR. . . . . . . . . . . . .
Template Known Secondary structure  TTTTTTTTTTS
S
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TTS
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B
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   243......250.........260.........270.........280.... .....290.........300....
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  HPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  VLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GRLVIDDQFN. . . . . . . . . . SKFPHIKVVGDVTFG. . . . . . . . .
Template Known Secondary structure  ....................................S
B


TTSB..........
SSTT
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   305....310.... .....320.........
 
   402.......410.........420.
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Query Sequence  GNSLLDLVVFGRAAGLHLQE
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Template Sequence  PMLAHKAEEEGIAAVEMLKT
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   330.........340.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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