Job Description P32131 Confidence 39.35% Date Thu Jan 5 11:49:16 GMT 2012 Rank 383 Aligned Residues 139 % Identity 13% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	L	E	Q	E	I	V	H	R	A	P	L	F	A	G	R	H	V	S	Q	L	H	W	G	G	G	T	P	T	Y	L	N	K	A	Q	I	S	R	L	M	K	L	L	R	E	N	F	Q	F	N	A	D	A	E	I	S	I	E	V	D	P	R	E	I	E	L	D	V	L	D	H	L	R	A	E	G	F	N
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.											.
Template Conservation																																		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.											.
Template Sequence		N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	.	.	.	.	.	.	.	P	L	A	T	Q	A	A	S	V	.	.	.	.	.	.	.	.	V	G	V	E	G	V	P	A	L	V	.	E	K	G	Q	Q	N	A	R	L	N	G	L	Q
Template Known Secondary structure														T			T	T							S		T	T	T	T	T			.	.	.	.	.	.	.				T	T	S	S			.	.	.	.	.	.	.	.					S						.										T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.											.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.								.	.	.	.	.	.	.	310	.									.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.													.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	S	M	G	V	Q	D	F	N	K	E	V	Q	R	L	V	N	R	E	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	E	E	F	I	F	A	L	L	N	H	A	R	E	I	G	F	T	S	T	N	I	D	L	I	Y	G	L	P	K	Q	T	P	E	S	F	A	F	T	L	K	R	V	A	E	L	N
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.
Template Sequence		N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	X	Q	Q	I	I	K	L	E	P	I	R	I	V	Y	V	S	C	N	.	.	.	.	.	.	.	.	.	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G
Template Known Secondary structure		S								T	T	S			S	S	S	G	G	G	T	T			S								T	T															S							S		.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390										.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	R	L	S	V	F	N	Y	A	H	L	P	T	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	I	A	R	L	A	X	L	D	X	F	P	H	T	G
Template Known Secondary structure													S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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