Job Description P0CE59 Confidence 15.07% Date Thu Jan 5 11:30:29 GMT 2012 Rank 21 Aligned Residues 111 % Identity 14% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																					.	.													.	.
Query SS confidence																																					.	.													.	.
Query Sequence		G	M	K	A	H	I	G	V	D	A	K	S	G	L	T	H	S	L	V	T	T	A	A	N	E	H	D	L	N	Q	L	G	N	L	L	.	.	H	G	E	E	Q	F	V	S	A	D	A	G	.	.	Y	Q	G	A	P	Q	R	E	E	L	A	E	V	D	V	D	W	L	I	A	E	R	P	G	K	V	R	T	L
Query Conservation																																					.	.													.	.
Alig confidence																																					.	.													.	.																										.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	W	P	I	T	H	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K	M	V	A	W	W	I	G	I	E	Q	S	F	G	V	P	Y	N	P	.	.	.	.
Template Known Secondary structure		T									T	T	T	T								S	S															T	T	S											T	T	T	T												T						S	S		S	S	S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	H	P	R	K	N	K	T	A	I	N	I	E	Y	M	K	A	S	I	R	A	R	V	E	H	P	F	R	I	I	K	R	Q	F	G	F	V	K	A	R	Y	K	G	L	L	K	N	D	N	Q	L	A	M	L	F	T	L	A	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	.	.	.	S	R	I	R	E	Q	A	N	T	I	E	T	I	V	L	M	A	V	H	C	M	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T														.	.	.				G	G	G		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
																				146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions