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Job DescriptionP0AEM6
Confidence99.80%DateThu Jan 5 11:23:43 GMT 2012
Rank8Aligned Residues117
% Identity24%Templatec3mzyA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  DDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA
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Template Sequence  EDLVQEGILGLLKAIKFYDETKS. SFSSFAFLCIRREXISAIRKANTQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   45....50.........60....... ..70.........80.........90.
 
   122.......130.........140.........150.........160.........170.........180.........190.........200.
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Query Sequence  ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYL
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   92.......100.........110.........120....
 
   202.......210.........220.........230........
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Query Sequence  QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK
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Template Sequence  IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE
Template Known Secondary structure  TTT

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   162.......170.........180.........190........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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