Job Description P0AEM6 Confidence 100.00% Date Thu Jan 5 11:23:43 GMT 2012 Rank 2 Aligned Residues 224 % Identity 27% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	A	E	G	V	M	D	K	H	S	L	W	Q	R	Y	V	P	L	V	R	H	E	A	L	R	L	Q	V	R	L	P	A	S	V	E	L	D	D	L	L	Q	A	G	G	I	G	L	L	N	A	V	E	R	Y	D	A	L	Q	G	T	A	F	T	T	Y	A	V	Q	R	I	R	G	A	M	L	D	E	L	R
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		I	A	R	E	G	E	A	A	R	Q	H	L	I	E	A	N	L	R	L	V	V	S	I	A	K	K	Y	T	G	R	.	.	.	G	L	S	F	L	D	L	I	Q	E	G	N	Q	G	L	I	R	A	V	E	K	F	E	Y	K	R	R	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	N	R	A	I	A
Template Known Secondary structure							T	T	G	G	G	S	S	S	S	S							T	T	T	T	S	T	T	S	S	.	.	.	S	S																	T	T	S			S	S	S	T	T		S	S	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		85	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		S	R	D	.	.	.	W	V	P	R	S	V	R	R	N	A	R	E	V	A	Q	A	I	G	Q	L	E	Q	E	L	G	R	N	A	T	E	T	E	V	A	E	R	L	G	I	D	I	A	D	Y	R	Q	M	L	L	D	T	N	N	S	Q	L	F	S	Y	D	E	W	R	E	E	H	G	D	S	I	E	L	V	T
Query Conservation					.	.	.
Alig confidence					.	.	.																																																																	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.
Template Sequence		D	Q	A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	K	L	S	R	T	A	R	Q	L	Q	Q	E	L	G	R	E	P	S	Y	E	E	I	A	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T	L	K	I	A	Q	E	P	V	S	L	E	T	P	I	D	.	.	.	.	.	.	.	.	F	I
Template Known Secondary structure			S	S	S	S	S																								S	S	S											S		S	S											T	T		S	S		S			S		S	S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.									.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		D	D	H	Q	R	E	N	P	L	Q	Q	L	L	D	S	N	L	R	Q	R	V	M	E	A	I	E	T	L	P	E	R	E	K	L	V	L	T	L	Y	Y	.	.	.	.	Q	E	E	L	N	L	K	E	I	G	A	V	L	E	V	G	E	S	R	V	S	Q	L	H	S	Q	A	I	K	R	L	R	T	K	L	G
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.
Template Conservation
Template Sequence		P	D	E	N	L	P	S	P	V	E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q	I	E	N	K	A	L	R	K	L	K	Y	H	E	S
Template Known Secondary structure						T	T		T	T																T	T	S	S		T	T	T	T					T	T	S	S	T	T	S	S										T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		238	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		429	430

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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