Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 10 Aligned Residues 408 % Identity 15% Template c3rc8A_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment Resolution 2.90 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V
Query Conservation
Alig confidence																											.	.	.	.																						.
Template Conservation																											.	.	.	.																						.
Template Sequence		Q	R	K	I	I	F	H	S	G	P	T	N	S	G	K	T	Y	H	A	I	Q	K	Y	F	S	.	.	.	.	A	K	S	G	V	Y	C	G	P	L	K	L	L	A	H	E	I	F	E	K	S	.	N	A	A	G	V	P	C	D	L	V	T	G	E	E	R	V	T	V	Q	P	N	G	K	Q	A	S	H	V	S
Template Known Secondary structure											S	S	S	S	S	T	T										.	.	.	.	S	S	S						S	S												.			T	T								S	S						S	S	S	S				S
Template Predicted Secondary structure																											.	.	.	.																						.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	D	.	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E
Query Conservation																																																																.
Alig confidence								.	.	.	.	.	.	.																	.																																	.
Template Conservation								.	.	.	.	.	.	.																	.
Template Sequence		C	T	V	E	M	C	.	.	.	.	.	.	.	S	V	T	T	P	Y	E	V	A	V	I	D	E	I	Q	M	.	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	C	A	E	E	V	H	L	C	G	E	P	A	A	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V	E	V	R	D	Y
Template Known Secondary structure				G	G	G		.	.	.	.	.	.	.		S	S	S										G	G	G	.	G	G		T	T	T																						G	G	G												T
Template Predicted Secondary structure								.	.	.	.	.	.	.																	.
Template SS confidence
		274	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		K	R	L	T	P	I	S	V	L	D	H	A	L	E	S	L	D	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	G	D	C	I	V	C	F	S	K	N	D	I	Y	S	V	S	R	Q	I	E	I	R	.	.	.	G	L	E	S	A	V	I	Y	G	S	L	P	P	G	T	K	L	A	Q
Template Known Secondary structure				S	S						S	S				S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						S	S														T	.	.	.	T								T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.				.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		258	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.					.	330	.
Predicted Secondary structure						.	.																																																																				.	.	.	.
Query SS confidence						.	.																																																																				.	.	.	.
Query Sequence		I	L	P	A	.	.	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	.	.	.	.	P	G	I
Query Conservation						.	.																																																																				.	.	.	.
Alig confidence						.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	K	F	N	D	P	N	D	P	C	K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	T	T	S	Q	A	L	Q	I	A	G	R	A	G	R	F	S	S	R	F	K	E	G	E
Template Known Secondary structure								T	T		S								G	G	G	G	S	S					.	B	S					S		S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B											T	T	B				T	T	T			S
Template Predicted Secondary structure																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.																.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		332	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure										.	.																				.	.														.	.	.	.	.	.
Query SS confidence										.	.																				.	.														.	.	.	.	.	.
Query Sequence		S	L	H	L	I	A	K	E	.	.	Q	A	E	R	A	A	A	Q	S	E	P	E	I	L	Q	S	D	L	S	.	.	G	L	L	M	E	L	L	Q	W	G	C	S	D	.	.	.	.	.	.	P	A	Q	M	S	W	L	D	Q	P	P	V	V	N	L	L	A	A	K	R	L	L	Q	M	L	G	A	L	E	G
Query Conservation										.	.																				.	.														.	.	.	.	.	.
Alig confidence										.	.																				.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	T	M	N	H	E	D	L	S	L	L	K	E	I	L	K	R	P	V	D	P	I	R	A	A	G	L	H	P	T	A	E	Q	I	E	M	F	A	Y	H	L	P	D	A	T	L	S	N	L	I	D	I	F	V	D	F	S	Q	V	D	G	Q	Y	F	V	C	N	M	D	D	F	K	F	S	A	E	L	I	Q
Template Known Secondary structure					S	S												T	S																									T	T	S														B			T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
			402	.	.	.	.	.	.	.		410	.	.	.	.	.	.				.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure		.									.								.	.	.
Query SS confidence		.									.								.	.	.
Query Sequence		.	E	R	L	S	A	Q	G	Q	.	K	M	A	A	L	G	N	.	.	.	D	P	R	L	A	A	M	L	V	S	A	K	N	D	D	E	A	A	T	A	A	K	I	A	A	I	L	E	E	P	P	R	M	G	N	S	D	L	G	V	A	F	S	R	N	Q	P	A	W	Q	Q	R	S	Q	Q	L	L
Query Conservation		.									.								.	.	.
Alig confidence		.									.								.	.	.
Template Conservation
Template Sequence		H	I	P	L	S	L	R	V	R	Y	V	F	C	T	A	P	I	N	K	K	Q	P	F	V	C	S	S	L	L	Q	F	A	R	Q	Y	S	R	N	E	P	L	T	F	A	W	L	R	R	Y	I	K	W	P	L	L	P	P	K	N	I	K	D	L	M	D	L	E	A	V	H	D	V	L	D	L	Y	L
Template Known Secondary structure		T	S													S				T	T																	T	T												T	T	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.