Job Description P37024 Confidence 99.97% Date Thu Jan 5 11:54:32 GMT 2012 Rank 47 Aligned Residues 300 % Identity 17% Template c3oiyB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima Resolution 2.35 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		T	G	Y	Q	R	L	W	A	K	R	I	V	Q	G	K	S	F	T	M	V	A	P	T	G	V	G	K	T	T	F	G	M	M	T	A	L	W	L	A	R	K	G	K	K	S	A	L	V	F	P	T	V	T	L	V	K	Q	T	L	E	R	L	Q	K	L	A	D	E	K	V	K	I	F	G	F	Y	S	S	M	K
Template Known Secondary structure													T	T	T								S	S		T	T														T	T	T								S	S																	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
								85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																											.																	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.																	.
Template Sequence		K	E	E	K	E	K	F	E	K	S	F	E	E	D	D	Y	H	I	L	V	F	S	T	Q	F	V	S	K	N	R	E	K	.	L	S	Q	K	R	F	D	F	V	F	V	D	D	V	D	A	.	V	L	K	A	S	R	N	I	D	T	L	L	M	M	V	G	I	P	E	E	I	I	R	K	A	F	S	T	I	K
Template Known Secondary structure															T			S																.		T	T				S					S					.			T	S											T	T
Template Predicted Secondary structure																																		.																	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
												147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	D	D	L	K	L	L	I	M	S	A	T	L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		Q	G	K	I	Y	E	R	P	K	N	L	K	P	G	I	L	V	V	S	S	A	T	A	K	P	R	G	I	R	P	L	L	F	R	D	L	L	N	F	T	V	G	R	L	V	S	V	A	R	N	I	T	H	V	R	I	S	S	R	S	K	E	K	L	V	E	L	L	E	I	F	.	.	.	.	R	D	G	I	L
Template Known Secondary structure		T	T							T	T										S	S							S	T	T							S	S																			S	S														.	.	.	.		S	S
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.																																							.												.	.
Template Conservation																						.	.	.	.	.	.	.	.																																							.												.	.
Template Sequence		I	F	A	Q	T	E	E	E	G	K	E	L	Y	E	Y	L	K	R	F	K	.	.	.	.	.	.	.	.	F	N	V	G	E	T	W	S	E	F	E	K	N	F	E	D	F	K	V	G	K	I	N	I	L	I	G	V	Q	A	Y	Y	V	D	L	P	E	R	.	I	K	Y	V	I	F	W	G	T	P	S	.	.
Template Known Secondary structure					S	S														T	T	.	.	.	.	.	.	.	.						S	S	S											T	T	S		S						T	T						T	T	T	.								S			T	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.																																							.												.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	P	G	I	S	L	H	L	I	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	D	V	Y	T	Y	I	Q	A	S	G	R	S	S	R	I	L	N	G	V	L	V	K	G	V	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											T	T					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions