Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 16 Aligned Residues 316 % Identity 19% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	V	A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y
Query Conservation
Alig confidence																																																																									.								.
Template Conservation																																																																									.								.
Template Sequence		P	F	T	L	D	P	F	Q	D	T	A	I	S	C	I	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	.	D	V	G	L	M	T	G	.
Template Known Secondary structure		S	S														T	T	T									S	S	S																T	T								S	S															T	S	.	S						S	.
Template Predicted Secondary structure																																																																									.								.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160
Predicted Secondary structure																																.																																																.
Query SS confidence																																.																																																.
Query Sequence		R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	.	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	.	D
Query Conservation																																.																																																.
Alig confidence		.	.	.	.																											.															.	.																																.
Template Conservation		.	.	.	.																																										.	.
Template Sequence		.	.	.	.	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	.	.	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y	V	F	L	S	A	T	I	P	N
Template Known Secondary structure		.	.	.	.	S		B				S		S																	S	S												T	G	G	.	.	G	T	T	S														S		T	T	S								S		S	S
Template Predicted Secondary structure		.	.	.	.																																										.	.
Template SS confidence
						225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.																							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure											.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	R	L	Q	Q	M	L	P	.	.	.	.	.	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G
Query Conservation											.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	M	E	F	A	E	W	I	C	K	I	H	S	Q	P	C	H	I	V	Y	T	N	F	R	P	T	P	L	Q	H	Y	L	F	P	A	H	G	D	G	I	Y	L	V	V	D	E	K	S	T	F	R	E	E	N	F	Q	K	A	M	A	S	I	A	K	G	D	I	Y	K	I	V	K	M	I	W	K	K	K	Y	N
Template Known Secondary structure													T		S											S	S									T	T	S	S								T	T	T												T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.																																	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	I	V	F	S	F	S	K	R	D	C	E	E	L	A	L	K	M	S	K	L	D	F	N	S	D	A	L	T	K	I	F	N	N	A	I	A	L	L	P	E	T	D	R	E	L	P	Q	I	K	H	I	L	P	L	L	R	R	G	I	G	I	H	H	S	G	L	L	P	I	L	K	E	V	I	E	I	L	F
Template Known Secondary structure								S												T		S												G	G	G	S		T						T	T									T						T						S		S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	P	.	.	.	G	I	S	L	H	L	I	A	K
Query Conservation																																																																						.	.	.
Alig confidence																							.	.	.																	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																							.	.	.																	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	G	F	L	K	V	L	F	A	T	E	T	F	S	I	G	L	N	M	K	.	.	.	T	V	V	F	T	S	V	R	K	W	D	G	Q	Q	F	R	.	.	.	.	.	.	.	.	.	W	V	S	G	G	E	Y	I	Q	M	S	G	R	A	G	R	R	G	L	D	D	R	G	I	V	I	M	M	I	D	E
Template Known Secondary structure				T									S				S						.	.	.					S		S				S	S	S				.	.	.	.	.	.	.	.	.														S			S	S	S		S	S
Template Predicted Secondary structure																							.	.	.																	.	.	.	.	.	.	.	.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.										.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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