Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 1 Aligned Residues 573 % Identity 32% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		S	S	L	P	V	A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	.	.	.	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		R	E	L	P	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E
Template Known Secondary structure		T	T	S	G	G	G	G	G												S								T	T	S	S															G	G	G	G	T								S																T	T			B	T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T
Query Conservation
Alig confidence																																																																					.
Template Conservation																																																																					.
Template Sequence		E	V	G	Y	S	I	R	F	E	N	K	T	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	L	S	R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	.	R	P	D	L	K	I	I	I	M	S	A	T
Template Known Secondary structure		T						T	T						T	T																			T	T		T	T									G	G	G																			.		T	T								S	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		L	D	A	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q
Template Known Secondary structure		S									T	T	S																			S	S			S																	S		S								S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
								237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	.	.	.	.	.	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T
Query Conservation		.	.	.	.	.	.																														.	.	.	.	.
Alig confidence		.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V	V	I	S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E
Template Known Secondary structure																		T	T							G	G	G	G	S						S	S	S	S										T					S				T	T																	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	P	G	I	S	L	H	L	I	A	K	E	Q	A	E	R	.	A	A	A	Q	S	E	P	E	I	L	Q	S	D	L	S	G	L	L	M	E	L	L	Q	W	G	C	S	D	P	A	Q	M	S	W	L	D	Q	P	P	V	V
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	P	G	K	C	F	R	L	Y	T	E	E	A	F	Q	K	E	L	I	E	Q	S	Y	P	E	I	L	R	S	N	L	S	S	T	V	L	E	L	K	K	L	G	I	D	D	L	V	H	F	D	F	M	D	P	P	A	P	E
Template Known Secondary structure																			G	G	G	S	S	S	S						S	S								T	S		S	S				G	G	G	G													T	T				S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	L	A	A	K	R	L	L	Q	M	L	G	A	L	E	.	G	E	R	L	S	A	Q	G	Q	K	M	A	A	L	G	N	D	P	R	L	A	A	M	L	V	S	A	K	N	D	D	E	A	A	T	A	A	K	I	A	A	I	L	E	E	P	P	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	M	M	R	A	L	E	E	L	N	Y	L	A	C	L	D	D	E	G	N	L	T	P	L	G	R	L	A	S	Q	F	P	L	D	P	M	L	A	V	M	L	I	G	S	F	E	F	Q	C	S	Q	E	I	L	T	I	V	A	M	L	S	V	P	N	V	F	I	R	P	T	K	D	K	K	R	A	D	D	A	K
Template Known Secondary structure													T	T	S	B		T	T	S		B								T	T	S	S	S											G	G	G	G	T													T	S				B				T	T
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
																																				450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.							.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	S	D	L	G	V	A	F	S	R	N	Q	P	A	W	Q	Q	R	S	Q	Q	L	L	K	R	L	N	V	R	G	G	E	A	D	.	.	.	.	.	.	S	S	L	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	F	A	H	P	D	G	D	H	I	T	L	L	N	V	Y	H	A	F	K	S	D	E	A	Y	E	Y	G	I	H	K	W	C	R	D	H	Y	L	N	Y	R	S	L	S	A	A	D	N	I	R	S	Q	L	E	R	L	M	N	R	Y	N	L	E	L	N	T	T	D	Y	E	S	P	K	Y	F	D	N	I	R
Template Known Secondary structure			T	T			T	T	B													T	S															T	T	B																						T	T								T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure																								.																		.
Query SS confidence																								.																		.
Query Sequence		P	L	L	A	G	A	F	A	D	R	I	A	R	R	R	G	Q	D	G	R	Y	Q	.	L	A	N	G	M	G	A	M	L	D	A	N	D	A	L	S	R	.	H	E	W	L	I	A	P	L	L	L	Q	G	S	A	S	P	D	A	R	I	L	L	A	L	L	V	D	I	D	E	L	V	Q	R	C	P	Q	L	V
Query Conservation																								.																		.
Alig confidence																								.																		.															.	.	.
Template Conservation																																																									.	.	.
Template Sequence		K	A	L	A	S	G	F	F	M	Q	V	A	K	K	R	S	G	A	K	G	Y	I	T	V	K	D	N	Q	D	V	L	I	H	P	S	T	V	L	G	H	D	A	E	W	V	I	Y	N	E	F	V	L	T	S	K	.	.	.	N	Y	I	R	T	V	T	S	V	R	P	E	W	L	I	E	I	A	P	A	Y	Y
Template Known Secondary structure									T	T	S						T	T	T	S	S				T	T	T								T	T	S				T	T		S										S	S	S	.	.	.																			T	T	T	S
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.				.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	S	D	T	V	E	W	D	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	S	N	F	Q	K	G	D	V	K
Template Known Secondary structure			G	G	G	S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		727	.	.	730	.	.	.	.	.	.	.