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Job DescriptionP37024
Confidence100.00%DateThu Jan 5 11:54:32 GMT 2012
Rank33Aligned Residues317
% Identity18%Templatec3i5yA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp
Resolution2.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20. ........30.........40......... 50.........60.........70.
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Query Sequence  AVLPELLTALDCAP. . QVLLSAPTGAGKSTWLPLQLLAHPGING. . . . . . . KIILLEPRRLAARNVAQRLAEL. . . . . . .
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Template Sequence  PVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGL
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   131........140.........150.........160.........170.........180.........190.........200.........210
 
   72.......80... ......90.........100.........110.. .......120...... ...130.........140.
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Query Sequence  LNEKPGDTVGYR. . . MRAQNCVGPNTRLEVVTEGVLTRMIQRDP. . ELSGVGLVILDEFH. . . . . ERSLQADLALALLLD
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Template Conservation                               
                                           
      
Template Sequence  KKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE
Template Known Secondary structure  GGS

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   211........220.........230.........240.........250.........260.........270.........280.........290
 
   142.......150.........160. ........170...... ...180.........190.........200...... ...
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Query Sequence  VQQGLRDDLKLLIMSATLDN. . . DRLQQMLPEAPVVIS. . . . EGRSFPVERRYLPLPAHQRFDDAVAVATAE. . . . . MLR
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Template Conservation                                                                                  
Template Sequence  KNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER
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   291........300.........310.........320.........330.........340.........350.........360.........370
 
   210.........220.........230.........240.........250.........260.........270.........280.........
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Query Sequence  QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD
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Template Sequence  DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ
Template Known Secondary structure  TT


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   371........380.........390.........400.........410.........420.........430.........440.........450
 
   290.........300.........310.........320....... ..330.........340..
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Query Sequence  CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRL. EPGISLHLIAKEQAE
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Template Sequence  IGV. . . . . . . . . . . . . . . . . . PSELANYIHRIGRTARSGKEGSSVLFICKDELP
Template Known Secondary structure  S
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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