Return to main results Retrieve Phyre Job Id

Job DescriptionP37024
Confidence99.88%DateThu Jan 5 11:54:32 GMT 2012
Rank57Aligned Residues298
% Identity20%Templatec3dmqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40........ .50.........60.........70.........80.........90...
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Query Sequence  APQVLLSAPTGAGKSTWLPLQLLAHPGIN. . GKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN. . . .
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Template Sequence  APRVLLADEVGLGKTIEAGXILHQQLLSGAAERVLIIVPET. LQHQWLVEXLRRFNLRFALFDDERYAEAQHDAYNPFDT
Template Known Secondary structure  S



TTS
TSS




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   170.........180.........190.........200.........210 .........220.........230.........240........
 
   94.....100.........110..... ....120.........130.........140.........150......... 160.....
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Query Sequence  TRLEVVTEGVLTRMIQRDPELS. . GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL. . . . . . DNDRLQ
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Template Sequence  EQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGXESHFARL
Template Known Secondary structure 
S
TSTTTTTS




SS



BTTB

TT
SSS
SS
SSS
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T
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   249250.........260.........270.........280.........290.........300.........310.........320........
 
   166...170
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Query Sequence  QMLPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RLLDPNRFHDFAQFVEEQKNYCPVADAVAXLLAGNKLSNDELNXLGEXIGEQDIEPLLQAANSDSEDAQSARQELVSXLX
Template Known Secondary structure 
TTT
SSTTTTTS



GGGTTSSTTTT
TT
SSTTGGGT


SS
STTTG
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   329330.........340.........350.........360.........370.........380.........390.........400........
 
   171........180.........190.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . APVVISEGRSFPVERRYLPLPAHQRFD
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Template Sequence  DRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIXGARKSAEDRARDXLYPERIYQEFEGDNATWWNFD
Template Known Secondary structure  GG
TTTTT


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TT

SSGGGGT
SGGGTTTTTSSS

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   409410.........420.........430.........440.........450.........460.........470.........480........
 
   198.200.........210.........220.........230.........240.........250.........260..... ....270.....
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Query Sequence  DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGM. . RKVVLATNIA
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Template Sequence  PRVEWLXGYLTSHRSQKVLVICAKAATALQLEQVLRERE. . GIRAAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCSEIG
Template Known Secondary structure  TSSS



SSTTTT..



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   489490.........500.........510.........520....... ..530.........540.........550.........560......
 
   276...280.........290.........300.........310.........320...... ...330........
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Query Sequence  ETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGR. . . LEPGISLHLIAK
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Template Sequence  SEGRNFQFASHXVXFDL. . . . . . . . . . . . . . . . . . PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE
Template Known Secondary structure  T
SS

TT


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   567..570.........580... ......590.........600.........610....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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