Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 9 Aligned Residues 370 % Identity 17% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	.	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N
Query Conservation																																					.
Alig confidence																																					.																					.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	M	L	R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	G	L	P	V	R	Y	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	N
Template Known Secondary structure		G	G	G	S	T	T									T	T	S		T	T	T	T												T	T									S											T	T	.	.	.	T	S								.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.												.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V
Query Conservation
Alig confidence																		.																																			.	.																											.
Template Conservation																		.																																			.	.																											.
Template Sequence		E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	.	S	P	N	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	K	V	E	.	.	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T	T	D	P	F	P	D	S	N	A	P	.
Template Known Secondary structure			S															.	S							S					S	S	T	T			S																.	.	T	T	S								S	S		T	T				S	S				S	S		.
Template Predicted Secondary structure																		.																																			.	.																											.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Sequence		I	H	D	L	Q	D	E	I	P	D	R	A	W	S	S	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	I	T	E	Y	A	G	K	T	V	W	F	V	A	S	V	K	M	G	N	E	I	A	M	C	L	Q	R	A	.	.	.	G	K	K	V	I	Q	L	N	R	K	S	Y	D	T	E
Template Known Secondary structure											S	S			S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S							S															T	.	.	.	T							S	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.																350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	.	.	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	P	G	I
Query Conservation																																														.	.
Alig confidence			.	.	.	.																					.	.	.	.																.	.																														.
Template Conservation			.	.	.	.																					.	.	.	.																																															.
Template Sequence		Y	.	.	.	.	P	K	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	N	F	.	.	.	.	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	T	S	A	S	A	A	Q	R	R	G	R	V	G	R	.	N	P	N	Q
Template Known Secondary structure		G	.	.	.	.	G	G	S	S	S				S					S	S						.	.	.	.	S		S																S	S	S							S														T	T	S	S		.		T	T
Template Predicted Secondary structure			.	.	.	.																					.	.	.	.																																															.
Template SS confidence
		395					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.					.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.						.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.															.
Query SS confidence																																																									.	.	.	.	.															.
Query Sequence		S	L	H	L	I	A	K	E	Q	A	E	R	A	A	A	Q	S	E	P	E	I	L	Q	S	D	L	S	G	L	L	M	E	L	L	Q	W	G	C	S	D	P	A	Q	M	S	W	L	D	Q	P	P	V	V	N	L	.	.	.	.	.	L	A	A	K	R	L	L	Q	M	L	G	A	L	E	.	G	E	R	L	S
Query Conservation																																																									.	.	.	.	.															.
Alig confidence								.	.	.																																															.	.	.	.	.															.
Template Conservation								.	.	.
Template Sequence		V	G	D	E	Y	H	.	.	.	Y	G	G	A	T	S	E	D	D	S	N	L	A	H	W	T	E	A	K	I	M	L	D	N	I	H	M	P	N	G	L	V	A	Q	L	Y	G	P	E	R	E	K	A	F	T	M	D	G	E	Y	R	L	R	G	E	E	K	K	N	F	L	E	L	L	R	T	A	D	L	P	V
Template Known Secondary structure								.	.	.			S							T	T	B												T	S			T	T	S							G	G	G	G	G	G					T	T	T	T																T	S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		469	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	G	Q	K	M	A	A	L	G	N	D	P	R	L	A	A	M	L	V	S	A	K	N	D	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	A	Y	K	V	A	S	N	G	I	Q	Y	T	D	R	K	W	C	F	D	G	P	R	T	N	A
Template Known Secondary structure										T	T			T	T			G	G	G	T		S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.