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Job DescriptionP37024
Confidence100.00%DateThu Jan 5 11:54:32 GMT 2012
Rank3Aligned Residues365
% Identity17%Templatec2wv9A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING. KIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN
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Template Sequence  EMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR. . . . . . . . . . . GLPVRYLTPREHS
Template Known Secondary structure  GGGSTT



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Query Sequence  TR. . LEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA
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Template Sequence  GNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE. . AGEAAAIFMTATPPGTSDP. FPDTN
Template Known Secondary structure  S


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Query Sequence  PVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSL
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Template Sequence  SPVHDVSSEIPDRAWSSGF. . . . . . . . . . . . . . . EWITDYAGKTVWFVASVKMSNEIAQCLQRA. . . GKRVIQLNRKSYD
Template Known Secondary structure  S




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Query Sequence  NDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA. . RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEP
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Template Sequence  TEYPK. . . . CKNGDWDFVITTDISEMGANFG. ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS
Template Known Secondary structure  GGG....GGT


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Query Sequence  GISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQ
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Template Sequence  QIGDEYH. . . . YGGGTSEDDTMLAHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERK. . . . . . . TFLE
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   468.470.... .....480.........490.........500.........510.........520.........530.. ....
 
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Query Sequence  KMAALGNDPRLAAMLVSA
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Template Sequence  LIKTADLPVWLAYKVASN
Template Known Secondary structure  TS


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   537..540.........550....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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