Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 4 Aligned Residues 379 % Identity 14% Template c2vbcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus Resolution 3.15 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																			.																																					.
Query SS confidence																																			.																																					.
Query Sequence		L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	.	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	R	.	A	Q	N	C	V	G	P	N	T
Query Conservation																																			.																																					.
Alig confidence																																			.																					.	.	.	.	.	.	.										.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		F	R	K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	R	E	A	L	K	R	R	L	R	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	.	.	.	.	.	.	.	G	L	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	G	R	E
Template Known Secondary structure			S	T	T									T	T	T			T	T	T												T	T								S	S											T	T	.	.	.	.	.	.	.	T	S							T	T		S						S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V
Query Conservation
Alig confidence																																																				.	.																											.
Template Conservation																																																				.	.																											.
Template Sequence		I	V	D	L	M	C	H	A	T	F	T	T	R	L	L	S	S	T	R	V	P	N	Y	N	L	I	V	M	D	E	A	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E	.	.	M	G	E	A	A	A	I	F	M	T	A	T	P	P	G	S	T	D	P	F	P	Q	S	N	S	P	.	I
Template Known Secondary structure																			S						S						S	T	T			S																.	.		T	S								S	S		T	T				S	S				S	S		.
Template Predicted Secondary structure																																																				.	.																											.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.												.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.												.	.	.	.
Template Sequence		E	D	I	E	R	E	I	P	E	R	S	W	N	T	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	I	T	D	Y	Q	G	K	T	V	W	F	V	P	S	I	K	A	G	N	D	I	A	N	C	L	R	K	S	.	.	.	G	K	R	V	I	Q	L	S	R	K	T	.	.	.	.	F
Template Known Secondary structure										S	S				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S							S	S													T	T	.	.	.	T								T	T	T	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.												.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.					390
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	.	.	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	P	G	I	S
Query Conservation																																							.	.
Alig confidence																														.									.	.																																							.	.	.
Template Conservation																														.																																																	.	.	.
Template Sequence		D	T	E	Y	P	K	T	K	L	T	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	R	.	A	G	R	V	I	D	P	R	R	C	L	K	P	V	I	L	T	D	G	P	E	R	V	I	L	A	G	P	I	P	V	T	P	A	S	A	A	Q	R	R	G	R	I	G	R	N	P	A	.	.	.
Template Known Secondary structure					T						S			S						G	G	G	G	T	T					.		S																S	S	S																						T	S	S		S			.	.	.
Template Predicted Secondary structure																														.																																																	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.						.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.														.
Query SS confidence																																																									.	.	.	.	.														.
Query Sequence		L	H	L	I	A	K	E	Q	A	E	R	A	A	A	Q	S	E	P	E	I	L	Q	S	D	L	S	G	L	L	M	E	L	L	Q	W	G	C	S	D	P	A	Q	M	S	W	L	D	Q	P	P	V	V	N	L	L	.	.	.	.	.	A	A	K	R	L	L	Q	M	L	G	A	L	E	.	G	E	R	L	S	A
Query Conservation																																																									.	.	.	.	.														.
Alig confidence		.																																																							.	.	.	.	.														.
Template Conservation		.
Template Sequence		.	Q	E	D	D	Q	Y	V	F	S	G	D	P	L	K	N	D	E	D	H	A	H	W	T	E	A	K	M	L	L	D	N	I	Y	T	P	E	G	I	I	P	T	L	F	G	P	E	R	E	K	T	Q	A	I	D	G	E	F	R	L	R	G	E	Q	R	K	T	F	V	E	L	M	R	R	G	D	L	P	V	W
Template Known Secondary structure		.	S	S								S							T	T	B											T	T	S			T	T								G	G	G	G	G	G			S		T	T	T	T				T	T											T	S
Template Predicted Secondary structure		.
Template SS confidence
			467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	Q	K	M	A	A	L	G	N	D	P	R	L	A	A	M	L	V	S	A	K	N	D	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	Y	K	V	A	S	A	G	I	S	Y	K	D	R	E	W	C	F	T	G	E	R	N	N	Q
Template Known Secondary structure								T	T	T			S	S			T	T	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.