Job Description P37024 Confidence 98.32% Date Thu Jan 5 11:54:32 GMT 2012 Rank 159 Aligned Residues 148 % Identity 23% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence		V	A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	.	.	.	.	.	.	.	.	.	.	.	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	.	.	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I
Template Known Secondary structure																S								S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.															.
Template Conservation												.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.															.
Template Sequence		H	V	P	I	Y	G	D	E	T	R	.	.	.	.	.	.	.	.	.	T	K	S	P	V	D	I	V	K	E	G	M	.	.	.	.	.	.	.	.	E	K	F	K	K	A	D	V	L	I	I	D	T	A	.	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I
Template Known Secondary structure		S							S	S	S	.	.	.	.	.	.	.	.	.			S	S	S	T	T						.	.	.	.	.	.	.	.		T	T	S	S		S								.		S		S	S											T	T	S	S	S			S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.															.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.										.	.	.	.	.	170	.	.	.	.	.	.									.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		153	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		L	I	M	S	A	T	L	.	.	D	N	D	R	L	Q	Q	M	L	P	E	A
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A
Template Known Secondary structure						G	G	G	G	G	G										T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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