Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 11 Aligned Residues 417 % Identity 22% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		E	L	L	T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	.	.	N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C
Query Conservation																																																															.	.
Alig confidence																																																															.	.										.
Template Conservation																																																																										.
Template Sequence		E	A	V	E	K	V	F	S	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	L	A	E	M	A	M	V	R	E	A	I	K	G	G	K	S	L	Y	V	V	P	L	R	A	L	A	G	E	K	Y	E	S	F	K	K	W	E	K	I	G	L	R	I	G	I	S	T	G	.	D	Y	E	S	R	D	E
Template Known Secondary structure								T	T		S							S	S																			T								S	S												G	G	G	G	T	T	T								S	.			S				T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.
Predicted Secondary structure																									.																					.																												.
Query SS confidence																									.																					.																												.
Query Sequence		V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	.	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	.	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	.	D	N	D	R	L	Q	Q
Query Conservation																									.																					.																												.
Alig confidence																									.																					.																												.
Template Conservation
Template Sequence		H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	R	N	R	A	S	W	I	K	A	V	S	C	L	V	V	D	E	I	H	L	L	D	S	E	K	R	G	A	T	L	E	I	L	V	T	K	M	R	R	M	N	K	A	L	R	V	I	G	L	S	A	T	A	P	N	V	T	E	I	A	E
Template Known Secondary structure		T	G	G	G		S															T	T		S	S	G	G	G							T	T	G	G	G	G	G		T	T	T																T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.
Query Sequence		M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	.	.	.	.	.	.	.	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D
Query Conservation																																				.	.	.	.	.	.	.
Alig confidence				.																																.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		W	L	.	D	A	D	Y	Y	V	S	D	W	R	P	V	P	L	V	E	G	V	L	C	E	G	T	L	E	L	F	D	G	A	F	S	T	S	R	R	V	K	F	E	E	L	V	E	E	C	V	A	E	N	G	G	V	L	V	F	E	S	T	R	R	G	A	E	K	T	A	V	K	L	S	A	I	T	A	K	Y
Template Known Secondary structure				.	T										S	S									T	T							T	T						B														T	S							S	S																	T	T
Template Predicted Secondary structure				.
Template SS confidence
		191	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		240	.																												.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.					.
Template Conservation																																																																	.	.	.					.
Template Sequence		V	E	N	E	G	L	E	K	A	I	L	E	E	N	E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V	V	E	D	A	F	R	R	G	N	I	K	V	V	V	A	T	P	T	L	.	.	.	V	N	L	P	.	A	R	R	V	I	V	R	S	L
Template Known Secondary structure													T	T			S												T	S						T	T	S															T	S								T	T		.	.	.					.		S							S
Template Predicted Secondary structure																																																																	.	.	.					.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.		.	.	.	340	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.								.	.
Predicted Secondary structure																																						.	.	.																			.	.	.												.	.	.	.	.	.	.
Query SS confidence																																						.	.	.																			.	.	.												.	.	.	.	.	.	.
Query Sequence		E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	.	.	.	P	G	I	S	L	H	L	I	A	K	E	Q	A	E	R	A	A	A	.	.	.	Q	S	E	P	E	I	L	Q	S	D	L	.	.	.	.	.	.	.	S	G
Query Conservation																																						.	.	.																			.	.	.												.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.																			.	.	.												.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A	G	R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	E	I	A	V	K	R	Y	I	F	G	E	P	E	R	I	T	S	K	L	G	V	E	T	H	L	R	F	H
Template Known Secondary structure		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T				T	T	T		S	S									S	S		T						T	T	T	S										T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.															.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.											.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.			.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																										.					.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.																										.					.	.
Query Sequence		L	L	M	E	L	L	Q	W	G	C	S	D	P	A	Q	M	.	.	.	.	.	.	.	.	.	.	S	W	L	D	Q	P	P	V	V	N	L	L	A	A	K	R	L	L	Q	M	L	G	A	L	E	.	G	E	R	L	.	.	S	A	Q	G	Q	K	M	A	A	L	G	N	D	P	R	L	A	A	M	L	V	S
Query Conservation																		.	.	.	.	.	.	.	.	.	.																										.					.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																										.					.	.
Template Conservation
Template Sequence		S	L	S	I	I	C	D	G	Y	A	K	T	L	E	E	L	E	D	F	F	A	D	T	F	F	F	K	Q	N	E	I	S	L	S	Y	E	L	E	R	V	V	R	Q	L	E	N	W	G	M	V	V	E	A	A	H	L	A	P	T	K	L	G	S	L	V	S	R	L	Y	I	D	P	L	T	G	F	I	F	H	D
Template Known Secondary structure									T	S		S	S										T	S																								T	T	S				S	S	S														T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	N	D	D	E	A	A	T	A	A	K	I	A	A	I	L	E	E	P	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	S	R	M	E	L	S	D	I	G	A	L	H	L	I	C	R	T	P	D	M
Template Known Secondary structure																		T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520