Job Description P37024 Confidence 98.85% Date Thu Jan 5 11:54:32 GMT 2012 Rank 134 Aligned Residues 155 % Identity 17% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.										.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																																						.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																																						.	.
Query Sequence		V	A	A	V	L	P	E	L	L	T	A	L	D	.	.	.	.	.	.	.	.	.	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	.	.	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E
Query Conservation															.	.	.	.	.	.	.	.	.																																						.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																						.	.
Template Conservation
Template Sequence		Q	H	A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I
Template Known Secondary structure																								S	S								S	T	T	S	S															T	T											S	S	S														T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		P	F	Y	G	S	Y	T	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	.	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T										.				T	T																		S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		158	.	160	.	.	.	.	.	.																	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		155	.	.	.	.							160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		M	S	A	T	L	.	.	.	.	.	.	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.
Template Conservation
Template Sequence		M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T	K
Template Known Secondary structure				T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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