Job Description P37024 Confidence 98.64% Date Thu Jan 5 11:54:32 GMT 2012 Rank 142 Aligned Residues 151 % Identity 19% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.												.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		V	A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	.	.	.	.	.	.	.	.	.	.	.	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	.	.	.	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		V	K	I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q
Template Known Secondary structure													T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		V	G	V	D	F	F	P	S	D	V	G	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	.	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T
Template Known Secondary structure		T	T							S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T													T	T		S								.				S	S																		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.																	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		L	L	I	M	S	A	T	L	.	.	.	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L
Template Known Secondary structure							T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions