Job Description P37024 Confidence 98.80% Date Thu Jan 5 11:54:32 GMT 2012 Rank 136 Aligned Residues 144 % Identity 24% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.										.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																							.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																																							.	.
Query Sequence		V	A	A	V	L	P	E	L	L	T	A	L	.	.	.	.	.	.	.	.	.	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	.	.	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E
Query Conservation														.	.	.	.	.	.	.	.	.																																							.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V
Template Known Secondary structure													T	T	S	S								S	S									T	T	S	S															T	T										S	S																T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		P	V	L	E	V	M	D	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	.	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V
Template Known Secondary structure								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T		S								.			S	S																			S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		155	.	.	.	.	160	.	.	.																	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	T	L	D	N	D	R	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	A	M	T	G	Q	E	A	L	S	V
Template Known Secondary structure				S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions