Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 18 Aligned Residues 299 % Identity 16% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.
Predicted Secondary structure																.	.																																																						.	.	.
Query SS confidence																.	.																																																						.	.	.
Query Sequence		A	V	L	P	E	L	L	T	A	L	D	C	A	P	.	.	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	.	.	.	K	P	G	D	T	V	G	Y
Query Conservation																.	.																																																						.	.	.
Alig confidence																.	.																																																						.	.	.
Template Conservation
Template Sequence		Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F
Template Known Secondary structure													S	S	S												T	T	T													T	T	T								S	S															S	T	T	T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
		83	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		R	M	R	A	Q	N	C	V	.	.	.	.	.	.	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.															.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																														.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	.	.	.	.	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	.	.	.	.	.	.	.	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T
Template Known Secondary structure		S														T	T			S						T				.	.	.	.		S					S	S								S	G	G	G	S					.	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure																														.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.					.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.								.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	.	.	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V
Template Known Secondary structure		S	S											T	T	T	S											B		B																							.	.	T	T	T										S	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.			.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S
Query Conservation
Alig confidence				.																																																		.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation				.																																																		.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Sequence		P	E	.	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	.	.	.	.	.	.	.	.	I	E	R	A	D	.	.	.	.	.	.	.	.	.	H	F	G	L	A	Q
Template Known Secondary structure		T	T	.	S							S	S															T	T	S							S	S	T	T	G	G	G	S			T	T						.	.	.	.	.	.	.	.		T	T	T	T	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure				.																																																		.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template SS confidence
		834	.		.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.									.	.	.	.	.										890	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		M	T	Q	R	A	G	R	A	G	R	L	.	E	P	G	I	S	L	H	L	I	A
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P
Template Known Secondary structure							T	T			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		896	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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