Phyre 2 alignment of P37024 with c2db3D

Job Description P37024
Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012

Rank 27 Aligned Residues 325

% Identity 18% Template c2db3D_

PDB info PDB header:hydrolase/rna Chain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence	A	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	.	.	.	.	.	.	.	.	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	I	Q	K	C	S	I	P	V	I	S	S	G	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	K	L	L	E	D	P	H	E	L	E	L	G	R	P	Q	V	V	I	V	S	P	T	R	E	L	A	I	Q	I	F	N	E	A	R	K	F	A	F	E	S	Y	L	K	I
Template Known Secondary structure												T	T									T	T	S																	S					B	T	T	B		S						S	S															T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure						.	.	.	.	.																													.
Query SS confidence						.	.	.	.	.																													.
Query Sequence	V	G	Y	R	M	.	.	.	.	.	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	.	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L
Query Conservation						.	.	.	.	.																													.
Alig confidence						.	.	.	.	.																													.
Template Conservation
Template Sequence	G	I	V	Y	G	G	T	S	F	R	H	Q	N	E	C	I	T	R	G	C	H	V	V	I	A	T	P	G	R	L	L	D	F	V	D	R	T	F	I	T	F	E	D	T	R	F	V	V	L	D	E	A	D	R	M	L	D	M	G	F	S	E	D	M	R	R	I	M	T	H	V	T	M	R	P	E	H	Q	T	L
Template Known Secondary structure					S	S	S											T			S																T	S	S			T	T								T					T	S												T		T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

	154	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence	I	M	S	A	T	L	.	.	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q
Query Conservation							.	.
Alig confidence							.	.																																																							.
Template Conservation																																																															.
Template Sequence	M	F	S	A	T	F	P	E	E	I	Q	R	M	A	G	E	F	L	K	N	Y	V	F	V	A	I	G	I	V	G	G	A	C	S	D	V	K	Q	T	I	Y	E	V	N	K	Y	A	K	R	S	K	L	I	E	I	L	S	E	Q	A	D	G	.	T	I	V	F	V	E	T	K	R	G	A	D	F	L	A	S	F
Template Known Secondary structure				S											G	G	G		S	S							S	S	T	T				T	T										G	G	G														T	T	.						S
Template Predicted Secondary structure																																																															.
Template SS confidence
	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.

	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R
Query Conservation
Alig confidence					.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	S	E	K	.	.	.	E	F	P	T	T	S	I	H	G	D	R	L	Q	S	Q	R	E	Q	A	L	R	D	F	K	N	G	S	M	K	V	L	I	A	T	S	V	A	S	R	G	L	D	I	K	N	I	K	H	V	I	N	Y	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Template Known Secondary structure			T	T	.	.	.	T								T	T	S														T	T	S								G	G	G	S	S	S				T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	509	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.																			.

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.											.	.	.	350	.	.	.	.
Predicted Secondary structure																	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	.	E	P	G	I	S	L	H	L	I	A	K	E	Q	A	E	R	A	A	A	.	.	.	.	.	.	.	.	.	.	Q	S	E	P	E	I	L	Q
Query Conservation																	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	K	I	D	D	Y	V	H	R	I	G	R	T	G	R	V	G	N	N	G	R	A	T	S	F	F	D	P	E	K	D	R	A	I	A	A	D	L	V	K	I	L	E	G	S	G	Q	T	V	P	D	F	L	R
Template Known Secondary structure	S	S									T	T	S	S		T	T											T	T	T															T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
	568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions