Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 8 Aligned Residues 376 % Identity 15% Template c1ymfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp Resolution 2.60 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.
Predicted Secondary structure																																.																																									.
Query SS confidence																																.																																									.
Query Sequence		A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	.	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	R	.	A	Q	N	C	V	G	P	N
Query Conservation																																.																																									.
Alig confidence																																.																									.	.	.	.	.	.	.										.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		X	L	K	K	G	X	T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	.	.	.	.	.	.	.	G	L	D	V	K	F	H	T	Q	A	F	S	A	H	G	S	G	R
Template Known Secondary structure		T	T	S	T	T									T	T	S		T	T	T	T													T								S	S												T	.	.	.	.	.	.	.	T	S						S	S								S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V
Query Conservation
Alig confidence																																																					.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.															.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	I	D	A	X	C	H	A	T	L	T	Y	R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S	I	A	A	R	G	W	A	A	H	R	A	R	.	.	A	N	E	S	A	T	I	L	X	T	A	T	P	P	.	.	.	.	.	.	.	.	.	.	G	T	S
Template Known Secondary structure																		S	S							S					T	T	T	T			S																.	.	T	T	S								S	S		T	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																					.	.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.											.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D
Query Conservation
Alig confidence																											.	.	.	.	.	.																																.	.	.													.	.	.
Template Conservation																											.	.	.	.	.	.																																.	.	.													.	.	.
Template Sequence		D	E	F	P	H	S	N	G	E	I	E	D	V	Q	T	D	I	P	S	E	P	W	N	T	G	.	.	.	.	.	.	H	D	W	I	L	A	D	K	R	P	T	A	W	F	L	P	S	I	R	A	A	N	V	X	A	A	S	L	R	K	A	.	.	.	G	K	S	V	V	V	L	N	R	K	T	F	.	.	.
Template Known Secondary structure			S	S				S	S											S	S			S	S	S	.	.	.	.	.	.		T							S							S															T	.	.	.	T								S	S	S		.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.																																.	.	.													.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.
Predicted Secondary structure																																								.																																						.
Query SS confidence																																								.																																						.
Query Sequence		Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	.	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	.	P	G	I
Query Conservation																																								.																																						.
Alig confidence		.	.	.	.	.	.	.	.	.																				.										.																																						.
Template Conservation		.	.	.	.	.	.	.	.	.																				.
Template Sequence		.	.	.	.	.	.	.	.	.	E	K	K	P	D	F	I	L	A	T	D	I	A	E	X	G	A	N	L	.	C	V	E	R	V	L	D	C	R	T	A	F	K	P	V	L	V	D	E	G	R	K	V	A	I	K	G	P	L	R	I	S	A	S	S	A	A	Q	R	R	G	R	I	G	R	N	P	N	R	D	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.					S					S	S	G	G	G			T	T		.			S															T	T	T	T																				T	T	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.
Template SS confidence
											396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		S	L	H	L	I	A	K	E	Q	A	E	R	A	A	A	Q	S	E	P	E	I	L	Q	S	D	L	S	G	L	L	M	E	L	L	Q	W	G	C	S	D	P	A	Q	M	S	W	L	D	Q	P	P	V	V	N	L	L	A	A	K	R	L	L	Q	M	L	G	A	L	E	.	G	E	R	L	S	A	Q	G	Q	K
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		D	S	Y	Y	Y	S	E	P	T	S	E	N	N	A	H	H	V	C	W	L	E	A	S	X	L	L	D	N	X	E	V	R	G	G	X	V	A	P	L	Y	G	V	E	G	T	K	T	P	V	S	P	G	E	X	R	L	R	D	D	Q	R	K	V	F	R	E	L	V	R	N	C	D	L	P	V	W	L	S	W	Q
Template Known Secondary structure								S							T	T	B											T	T	S			G	G	G						S	T	T						S	S		T	T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	A	L	G	N	D	P	R	L	A	A	M	L	V	S	A	K	N	D	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	K	A	G	L	K	T	N	D	R	K	W	C	F	E	G	P	E	E	H	E
Template Known Secondary structure				T	T	T			T	T			G	G	G	T	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.