Job Description P37024 Confidence 98.39% Date Thu Jan 5 11:54:32 GMT 2012 Rank 156 Aligned Residues 152 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence		V	A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	.	.	.	.	.	.	.	.	.	.	.	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	.	.	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		I	S	I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I
Template Known Secondary structure													T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	.	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K
Query Conservation																																																															.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	Q	V	Y	G	E	P	N	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V
Template Known Secondary structure		T							S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T													T	T		S									S			S	S	T																		S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.																	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		152	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		L	L	I	M	S	A	T	L	.	.	.	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I
Template Known Secondary structure							T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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