Phyre 2 alignment of P37024 with c1oywA

Job Description P37024
Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012

Rank 21 Aligned Residues 307

% Identity 18% Template c1oywA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase; PDBTitle: structure of the recq catalytic core

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	L	P	E	L	L	T	A	L	D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N
Query Conservation
Alig confidence																																				.	.	.																									.
Template Conservation																																				.	.	.																									.
Template Sequence	G	Q	E	E	I	I	D	T	V	L	S	G	R	D	C	L	V	V	X	P	T	G	G	G	K	S	L	C	Y	Q	I	P	A	L	L	.	.	.	L	N	G	L	T	V	V	V	S	P	L	I	S	L	X	K	D	Q	V	D	Q	L	Q	A	.	N	G	V	A	A	A	C	L	N	S	T	Q	T	R	E	Q	Q
Template Known Secondary structure	T										T	T								S																.	.	.	S	S	S							S															.	T	T								T	T	S
Template Predicted Secondary structure																																				.	.	.																									.
Template SS confidence
	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

	89	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																							.																															.	.
Query SS confidence			.	.	.	.	.	.																							.																															.	.
Query Sequence	C	V	.	.	.	.	.	.	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	.	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	.	.	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L
Query Conservation			.	.	.	.	.	.																							.																															.	.
Alig confidence			.	.	.	.	.	.																							.																															.	.
Template Conservation
Template Sequence	L	E	V	X	T	G	C	R	T	G	Q	I	R	L	L	Y	I	A	P	E	R	L	X	L	D	N	F	L	E	H	L	A	H	W	N	P	V	L	L	A	V	D	E	A	H	C	I	S	Q	W	G	H	D	F	R	P	E	Y	A	A	L	G	Q	L	R	Q	R	F	P	T	L	P	F	X	A	L	T	A	T	A
Template Known Secondary structure										T			S										T	S	T	T						T	T	S								S	S	G	G	G	G		T	T	S	S								G	G	G	G						T	T	S							S
Template Predicted Secondary structure
Template SS confidence
	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence	D	N	.	.	.	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I
Query Conservation			.	.	.
Alig confidence			.	.	.																																						.	.	.	.																																		.
Template Conservation																																											.	.	.	.																																		.
Template Sequence	D	D	T	T	R	Q	D	I	V	R	L	L	G	L	N	D	P	L	I	Q	I	S	S	F	D	R	P	N	I	R	Y	X	L	X	E	K	F	K	P	L	D	Q	.	.	.	.	L	X	R	Y	V	Q	E	Q	R	G	K	S	G	I	I	Y	C	N	S	R	A	K	V	E	D	T	A	A	R	L	Q	S	K	.
Template Known Secondary structure													T			S											T	T									S	S					.	.	.	.								T	T	T								S	S														T	.
Template Predicted Secondary structure																																											.	.	.	.																																		.
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S
Query Conservation
Alig confidence	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	G	I	S	A	A	A	Y	H	A	G	L	E	N	N	V	R	A	D	V	Q	E	K	F	Q	R	D	D	L	Q	I	V	V	A	T	V	A	F	G	X	G	I	N	K	P	N	V	R	F	V	V	H	F	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	N	I	E	S
Template Known Secondary structure	.	.	T								T	T	S														T	T	S		S						T	T	S		T	T	T			T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																			.	.	.	.	.	.

	317	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence	M	T	Q	R	A	G	R	A	G	R	L	.	E	P	G	I	S	L	H	L	I	A	K	E	Q	A	E	R	A
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence	Y	Y	Q	E	T	G	R	A	G	R	D	G	L	P	A	E	A	X	L	F	Y	D	P	A	D	X	A	W	L
Template Known Secondary structure						T	T	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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