Job Description P37024 Confidence 92.17% Date Thu Jan 5 11:54:32 GMT 2012 Rank 438 Aligned Residues 143 % Identity 17% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.													.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		V	A	A	V	L	P	E	L	L	T	A	L	D	C	A	P	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	.	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																							.
Template Conservation																																							.	.	.
Template Sequence		F	I	K	I	V	Y	D	E	L	S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I
Template Known Secondary structure														T	T		S						S		S	S	S	S								S			.	.	.													T	T											S	S
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	.	.	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L
Query Conservation																																																															.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.								.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		G	V	P	V	Y	G	E	P	G	E	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D	T	A	.	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E
Template Known Secondary structure		T							T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T		S								.		S			T	T																			S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.																	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		151	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		K	L	L	I	M	S	A	T	L	.	.	.	D	N	D	R	L	Q	Q	M	L
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		V	T	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	K	F	N
Template Known Secondary structure								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions