Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 34 Aligned Residues 309 % Identity 23% Template c1hv8B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii Resolution 3.00 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																.																													.	.																							.	.	.
Query SS confidence																.																													.	.																							.	.	.
Query Sequence		A	V	L	P	E	L	L	T	A	L	D	C	A	P	.	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	.	.	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	.	.	.	L	N	E	K	P	G	D	T	V	G
Query Conservation																.																													.	.																							.	.	.
Alig confidence																.																													.	.																							.	.	.
Template Conservation
Template Sequence		D	I	Q	X	K	V	I	P	L	F	L	N	D	E	Y	N	I	V	A	Q	A	R	T	G	S	G	K	T	A	S	F	A	I	P	L	I	E	L	V	N	E	N	N	G	I	E	A	I	I	L	T	P	T	R	E	L	A	I	Q	V	A	D	E	I	E	S	L	K	G	N	K	N	L	K	I	A	K	I	Y	G
Template Known Secondary structure														T		S								S	S	S	S													S		S	S	S	S								S																		S	S									T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		82	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																										.
Query SS confidence								.																										.
Query Sequence		Y	R	M	R	A	Q	.	N	C	V	G	P	N	T	R	L	E	V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	.	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L
Query Conservation								.																										.
Alig confidence								.																										.															.	.
Template Conservation																																																	.	.
Template Sequence		G	K	A	I	Y	P	Q	I	K	A	L	K	N	A	N	I	V	V	G	T	P	G	R	I	L	D	H	I	N	R	G	T	L	N	L	K	N	V	K	Y	F	I	L	D	E	A	D	.	.	E	X	L	N	X	G	F	I	K	D	V	E	K	I	L	N	A	C	N	K	D	K	R	I	L	L	F	S	A	T	X
Template Known Secondary structure		T	S											T		S															T	T	S	S		G	G	G								T			.	.				T	T	T	T										T	S		S	S								S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		D	N	.	.	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E	G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G
Query Conservation				.	.
Alig confidence				.	.																																						.	.	.	.	.																																	.	.
Template Conservation																																											.	.	.	.	.																																	.	.
Template Sequence		P	R	E	I	L	N	L	A	K	K	Y	X	G	D	Y	S	F	I	K	A	K	I	N	A	N	I	E	Q	S	Y	V	E	V	N	E	N	E	R	F	E	A	.	.	.	.	.	L	C	R	L	L	K	N	K	E	F	Y	G	L	V	F	C	K	T	K	R	D	T	K	E	L	A	S	X	L	R	D	I	.	.
Template Known Secondary structure															S								S	T	T	T	S									G	G	G					.	.	.	.	.							S	T	T								S	S												T	T	T	.	.
Template Predicted Secondary structure																																											.	.	.	.	.																																	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A	I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M
Query Conservation
Alig confidence		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	G	F	K	A	G	A	I	H	G	D	L	S	Q	S	Q	R	E	K	V	I	R	L	F	K	Q	K	K	I	R	I	L	I	A	T	D	V	X	S	R	G	I	D	V	N	D	L	N	C	V	I	N	Y	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	N	P	E	S	Y
Template Known Secondary structure		.	T								S	S	S															T	S	S	S						T	T								S			S					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																			.	.	.	.	320	.	.
		318	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		T	Q	R	A	G	R	A	G	R	L	.	E	P	G	I	S	L	H	L	I	A	K	E	Q	A	E	R	A
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		X	H	R	I	G	R	T	G	R	A	G	K	K	G	K	A	I	S	I	I	N	R	R	E	Y	K	K	L
Template Known Secondary structure					S	T	T	T			T	T	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions