Job Description P37024 Confidence 100.00% Date Thu Jan 5 11:54:32 GMT 2012 Rank 6 Aligned Residues 387 % Identity 19% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	A	P	Q	V	L	L	S	A	P	T	G	A	G	K	S	T	W	L	P	L	Q	L	L	A	H	P	G	I	N	G	K	I	I	L	L	E	P	R	R	L	A	A	R	N	V	A	Q	R	L	A	E	L	L	N	E	K	P	G	D	T	V	G	Y	R	M	R	A	Q	N	C	V	G	P	N	T	R	L	E
Query Conservation
Alig confidence																													.	.	.																																								.	.	.	.	.
Template Conservation																													.	.	.																																								.	.	.	.	.
Template Sequence		Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	Q	.	.	.	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	R	T	I	T	.	.	.	.	.	T	G	S	P	I	T
Template Known Secondary structure		S	S										T	T	S		T	T	T								T	T	.	.	.	T								S																	S								S	S					.	.	.	.	.				S
Template Predicted Secondary structure																													.	.	.																																								.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	T	E	G	V	L	T	R	M	I	Q	R	D	P	E	L	S	G	V	G	L	V	I	L	D	E	F	H	E	R	S	L	Q	A	D	L	A	L	A	L	L	L	D	V	Q	Q	G	L	R	D	D	L	K	L	L	I	M	S	A	T	L	D	N	D	R	L	Q	Q	M	L	P	E	A	P	V	V	I	S	E
Query Conservation
Alig confidence											.	.	.																																					.																	.	.	.	.
Template Conservation											.	.	.																																					.																	.	.	.	.
Template Sequence		Y	S	T	Y	G	K	F	L	A	.	.	.	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	.	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.	.	.	V	T	V	P	H	P	N	I	E	E	V
Template Known Secondary structure											.	.	.	T	T							S						T	T	T			S														T	T	T	.	T	T		S							S	S		T	T		.	.	.	.						T	T
Template Predicted Secondary structure											.	.	.																																					.																	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	F	P	V	E	R	R	Y	L	P	L	P	A	H	Q	R	F	D	D	A	V	A	V	A	T	A	E	M	L	R	Q	E	S	G	S	L	L	L	F	L	P	G	V	G	E	I	Q	R	V	Q	E	Q	L	A	S	R	I	G	S	D	V	L	L	C	P	L	Y	G	A	L	S	L	N	D	Q	R	K	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																	.	.	.
Template Sequence		A	L	S	T	T	G	E	I	P	F	Y	G	K	A	I	P	L	E	V	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	V	A	L	.	.	.	G	I	N	A	V	A	Y	Y	R	G	L	D	V	S	V	I	.	.	.
Template Known Secondary structure					S		S	S				T	T					T					.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							S	S														T	.	.	.	T								T	T	S		G	G	G	S	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360														.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		I	L	P	A	P	Q	G	M	R	K	V	V	L	A	T	N	I	A	E	T	S	L	T	I	E	G	I	R	L	V	V	D	C	A	Q	E	R	V	A	R	.	.	F	D	P	R	T	G	L	T	R	L	I	T	Q	R	V	S	Q	A	S	M	T	Q	R	A	G	R	A	G	R	L	E	P	G	I	S	L	H	L
Query Conservation																																										.	.
Alig confidence		.	.	.	.																		.	.	.	.																.	.
Template Conservation		.	.	.	.																		.	.	.	.
Template Sequence		.	.	.	.	P	T	S	G	D	V	V	V	V	A	T	D	A	L	F	T	G	.	.	.	.	D	F	D	S	V	I	D	C	N	T	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	L	P	Q	D	A	V	S	R	T	Q	R	R	G	R	T	G	R	G	K	P	G	I	Y	R	F	V
Template Known Secondary structure		.	.	.	.		S	S	S	S							T	T					.	.	.	.		B	S																	S	S	S											B									T	T	B		S	S	S							S
Template Predicted Secondary structure		.	.	.	.																		.	.	.	.
Template SS confidence
						401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		I	A	K	E	Q	A	E	R	A	A	A	Q	S	E	.	P	E	I	L	Q	S	D	L	S	G	L	L	M	E	L	L	Q	W	G	C	S	D	P	A	Q	M	S	W	L	D	Q	P	P	V	V	N	L	L	A	A	K	R	L	L	Q	M	L	G	A	L	E	G	E	R	L	S	A	Q	G	Q	K	M	A	A	L
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		A	P	G	E	R	P	S	G	M	F	D	S	S	V	L	C	E	C	Y	D	A	G	A	W	Y	E	L	T	P	A	E	T	T	V	R	L	R	A	Y	M	N	T	P	G	L	P	V	C	Q	D	H	L	E	F	W	E	G	V	F	T	G	L	T	H	I	D	A	H	F	L	S	Q	T	K	Q	S	G	E	N	F
Template Known Secondary structure			S			B		S		B																S																	S	T	T	S		B																	S												T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	D	P	R	L	A	A	M	L	V	S	A	K	N	D	D	E	A	A	T	A	A	K	I	A	A	I	L	E	E	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Y	L	V	A	Y	Q	A	T	V	C	A	R	A	Q	A	P	P	P	S	W	D	Q	M	W	K	C	L	I	R	L	K	P
Template Known Secondary structure																T				S			S	G	G	G	G	G	G	T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590