 |
Job Description | P68688 | Confidence | 25.89% | Date | Thu Jan 5 12:11:08 GMT 2012 |
Rank | 423 | Aligned Residues | 83 |
% Identity | 24% | Template | c2rliA_ |
PDB info |
PDB header:metal transport | Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; |
PDBTitle: solution structure of cu(i) human sco2
|
Resolution | UNK |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
T | V | I | F | G | R | S | G | C | P | Y | C | V | R | A | . |
. |
. |
. |
. |
K | D | L | A | E | K | L | S | N | E | R | D | D | F | Q | Y | Q | Y | V | D | I | R | . |
. |
. |
. |
. |
A | E | G | I | T | K | E | D | L | Q | Q | K | A | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|
|
|
|   |   |   |
|
|   |
|   |   |
| . | . | . | . | . |
|   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|   |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | M | Y | F | G | F | T | H | C | P | D | I | C | P | D | E | L | E | K | L | V | Q | V | V | R | Q | L | E | A | E | P | G | L | P | P | V | Q | P | V | F | I | T | V | D | P | E | R | D | D | V | E | A | M | A | R | Y | V | Q | D | F | H | P | R | L | L | G | L | T | G | S | T | K | Q | V | A | Q | A | S | H | S |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T | S |
|
|  |  |  |  |  |  |  | S |
| S | T | T |
|
|  |  |  |  |  |  |  |  |  | T | T |
| T | T |
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
54 | . | . | . | . | . | 60 | . | . | . | . | |
|
|
. | . | . | . | . | 70 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  | . | . | . |
|
|  |  |  |  | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | P | V | E | T | V | P | Q | I | F | V | . |
. |
. |
D | Q | Q | H | I | G | . |
. |
. |
. |
. |
. |
G | Y | T | D | F | A | A | W | V | K | E | N | L | D | A |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|
|   |
|
|
| . | . | . |   |
|   |   |
|
| . | . | . | . | . | . |
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
Y | R | V | Y | Y | N | A | G | P | K | D | E | D | Q | D | Y | I | V | D | H | S | I | A | I | Y | L | L | N | P | D | G | L | F | T | D | Y | Y | G | R | S | R | S | A | E | Q | I | S | D | S | V | R | R | H | M | A | A |
Template Known Secondary structure |   |
S |
|
|
|
|  |  |
|
|
|
| S | S |
|
|
|
|  |  |
|
|
|  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
205 | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|