Phyre 2 alignment of P76440 with d2ivda1

Job Description P76440
Confidence 99.74% Date Thu Jan 5 12:23:00 GMT 2012

Rank 116 Aligned Residues 276

% Identity 16% Template d2ivda1

SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain

Resolution 2.3

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.											.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Query Sequence	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	G	Y	D	V	T	I	Y	E	K	E	A	H	P	G	G	.	.	.	.	.	.	.	.	.	.	W	L	R	N	G	I	P	Q	F	R	L	P	Q	S	V	L	D	A	E	I	A	R	I	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																																					.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	V	A	V	V	G	G	G	I	S	G	L	A	V	A	H	H	L	R	S	R	G	T	D	A	V	L	L	E	S	S	A	R	L	G	G	A	V	G	T	H	A	L	A	G	Y	L	V	E	Q	G	P	N	S	F	L	D	R	E	P	A	T	R	A	L	A	A	A	L	N	L	E	G	R	I	R	A	A	D	P
Template Known Secondary structure								B												T	T	T								S	S	S	S	S	B	T	T							T	T					S	S						T	T											T	T		G	G	G				S		S
Template Predicted Secondary structure
Template SS confidence
	11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90

	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence	K	M	G	V	T	I	K	C	N	N	E	V	G	N	T	L	T	L	E	Q	L	K	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	D	V	E	I	A	V	D	F	L	Q	R	A	R	Q	A	Q	G	D	I	S	I	P	Q	S	A	L	I	I	G	G	G	.	.	.
Query Conservation																																																																														.	.	.
Alig confidence																																																																														.	.	.
Template Conservation
Template Sequence	A	A	K	R	R	Y	V	Y	T	R	G	R	L	R	S	V	P	A	S	P	P	A	F	L	A	S	D	I	L	P	L	G	A	R	L	R	V	A	G	E	L	F	S	R	R	A	P	E	G	V	D	E	S	L	A	A	F	G	R	R	H	L	G	H	R	A	T	Q	V	L	L	D	A	V	Q	T	G	I	Y	A
Template Known Secondary structure	S									T	T								S						T		S	S	S										G	G	G	G						T	T				B									T								T
Template Predicted Secondary structure
Template SS confidence
	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

																										263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	M	D	V	A	S	T	L	K	V	L	G	C	Q	A	V	T	C	V	A	R	E	E	L	D	E	F	P	A	S	E	K	E	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	D	V	E	Q	L	S	V	A	A	T	F	P	M	L	V	K	M	E	R	E	H	R	S	L	I	L	G	A	I	R	A	Q	K	A	Q	R	Q	A	G	T	A	P	K	L	S	G	A	L	S	T	F	D	G	G	L	Q	V	L	I	D	A	L	A	A	S	L	G	D	A	A	H	V	G	A	R	V	E	G	L
Template Known Secondary structure			T	T	T	B	B																S	S													T					S											T	T		T												G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.															360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	G	N	K	V	T	F	K	H	V	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A	F	A	E	L	E	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	R	E	G	W	R	L	I	I	E	E	H	G	R	R	A	E	L	S	V	A	Q	V	V	L	A	A	P	A	H	A	T	A	K	L	L	R	P	L	D	D	A	L	A	A	L	V	A	G	I	Y	N	L	G	H	L	E	R	V	A	A	I	D	A	A	L	Q	R	L	P	G	L	H	L	I	G	N	A	Y	K
Template Known Secondary structure												T	T								S						S										T	T	T										T			B	T	T														T	S	T	T					S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

	384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	D	K	T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence	G	V	G	.	L	N	D	C	I	R	N	A	A	Q	L	A	D	A	L
Template Known Secondary structure			S	.
Template Predicted Secondary structure				.
Template SS confidence
	445	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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