Job Description P76440 Confidence 100.00% Date Thu Jan 5 12:23:00 GMT 2012 Rank 9 Aligned Residues 278 % Identity 21% Template c3ntaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase Resolution 2.01 Å

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		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																										.	.																.	.	.														.	.
Query SS confidence																										.	.																.	.	.														.	.
Query Sequence		L	G	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	G	.	.	Y	D	V	T	I	Y	E	K	E	A	H	P	G	G	W	.	.	.	L	R	N	G	I	P	Q	F	R	L	P	Q	S	.	.	V	L	D	A	E	I	A	R	I	E	K	M	G	V	T	I	K	C	N	N	E
Query Conservation																										.	.																.	.	.														.	.
Alig confidence																										.	.																.	.	.														.	.
Template Conservation
Template Sequence		X	K	K	I	L	I	I	G	G	V	A	G	G	A	S	A	A	A	R	A	R	R	L	S	E	T	A	E	I	I	X	F	E	R	G	E	Y	V	S	F	A	N	C	G	L	P	Y	H	I	S	G	E	I	A	Q	R	S	A	L	V	L	Q	T	P	E	S	F	K	A	R	F	N	V	E	V	R	V	K	H	E
Template Known Secondary structure											S	T	T													S	S								S	S	S		S	S	B		G	G	G						T	S	S	S			G	G	G	G	B																	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		197							.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure			.	.	.	.	.	.											.	.	.	.	.	.																																												.	.
Query SS confidence			.	.	.	.	.	.											.	.	.	.	.	.																																												.	.
Query Sequence		V	.	.	.	.	.	.	G	N	T	L	T	L	E	Q	L	K	.	.	.	.	.	.	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	D	V	E	I	A	V	D	F	L	Q	R	A	R	Q	A	Q	G	D	I	.	.	S	I	P	Q	S	A	L	I	I	G	G	G
Query Conservation			.	.	.	.	.	.											.	.	.	.	.	.																																												.	.
Alig confidence			.	.	.	.	.	.											.	.	.	.	.	.																																												.	.
Template Conservation
Template Sequence		V	V	A	I	D	R	A	A	K	L	V	T	V	R	R	L	L	D	G	S	E	Y	Q	E	S	Y	D	T	L	L	L	S	P	G	A	A	P	I	V	P	P	I	P	G	V	D	N	P	L	T	H	S	L	R	N	I	P	D	X	D	R	I	L	Q	T	I	Q	X	N	N	V	E	H	A	T	V	V	G	G	G
Template Known Secondary structure							T	T	T	T							T	T	T									S																T	T			S	T	T					S	S														T	T		S								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	A	M	D	V	A	S	T	L	K	V	L	G	C	Q	A	V	T	C	V	A	R	E	E	L	D	E	F	P	A	S	E	K	E	.	.	.	.	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V	E	G	N	K	V	T	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																			.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		F	I	G	L	E	X	X	E	S	L	H	H	L	G	I	K	.	T	T	L	L	E	L	A	D	Q	V	X	T	P	V	D	R	E	X	A	G	F	A	H	Q	A	I	R	D	Q	G	V	D	L	R	L	G	T	A	L	S	E	V	S	Y	Q	V	Q	T	H	V	A	S	D	A	A	G	E	D	T	A	H	Q	H
Template Known Secondary structure														T	T			.						S	S	S	S	S		S	S	S															T	T						S																	T	T	T	T				T	T
Template Predicted Secondary structure																		.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
							326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	H	V	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A	F	A	.	.	.	.	E	L	E	P	Q	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	G	D	K	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	G	H	L	S	L	T	L	S	N	G	E	L	L	E	T	D	L	L	I	X	A	I	G	V	R	P	E	T	Q	L	A	R	D	A	G	L	A	I	G	E	L	G	G	I	K	V	N	A	X	X	Q	T	S	D	P	A	I	Y	A	V	G	D	A	V	E	E	Q	D	F	V	T	G	Q	A	C	L	V	P
Template Known Secondary structure		T	T								T	T	S						S						S												T	T			B		T	T	S	S	B				T	T		B		S	S	T	T					S	T	T	B				B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	G	P	A	N	R	Q	G	R	X	A	A	D	N	X
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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