Job Description P76440 Confidence 100.00% Date Thu Jan 5 12:23:00 GMT 2012 Rank 7 Aligned Residues 336 % Identity 18% Template c3k30B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	F	I	R	S	I	Y	F	R	N	F	K	G	A	A	E	T	I	R	E	N	N	A	L	G	A	V	C	A	R	V	C	P	T	E	K	L	C	Q	S	G	C	T	R	A	G	V	D	A	P	I	D	I	G	R	L	Q	R	F	V	T	D	F	E	Q	Q	T	G	M	E	I	Y	Q	P	G	T	K	T	L
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.																.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.																.
Template Sequence		P	F	L	P	N	K	I	R	D	G	R	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	R	E	C	I	G	.	C	N	I	C	V	S	G	D	L	T	M	S	P	I	R	.	C	T	Q	N	P	S	M	G	E	E	W	R	R	G	W	H	P	E	R	I	R	A	K	E	S	D
Template Known Secondary structure		T	T								T		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G							.										T	T	S				.		S	S		T	T	T	T	T								S	S						S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.																.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.																		.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																												.	.																						.
Query SS confidence																																												.	.																						.
Query Sequence		G	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	G	Y	D	V	T	I	Y	E	K	E	A	H	P	G	G	W	L	R	N	G	.	.	I	P	Q	F	R	L	P	Q	S	V	L	D	A	E	I	A	R	I	E	K	M	.	G	V	T	I	K	C	N	N	E	V	G	N	T	L
Query Conservation																																												.	.																						.
Alig confidence																																												.	.																						.												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	R	V	L	V	V	G	A	G	P	S	G	L	E	A	A	R	A	L	G	V	R	G	Y	D	V	V	L	A	E	A	G	R	D	L	G	G	R	V	T	Q	E	S	A	L	P	G	L	S	A	W	G	R	V	K	E	Y	R	E	A	V	L	A	E	L	P	N	V	E	I	Y	R	E	S	P	M	T	.	.	.
Template Known Secondary structure										S														T								S	S	S	S	S		T							T	S	T	T		G	G	G	G												T		T	T					S	S					.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.																															.	.
Query SS confidence																																.	.	.																															.	.
Query Sequence		T	L	E	Q	L	K	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	.	.	.	D	V	E	I	A	V	D	F	L	Q	R	A	R	Q	A	Q	G	D	I	S	I	P	Q	S	A	L	I	I	G	G	.	.	G	D	V	A	M	D	V	A	S	T	L	K	V	L	G
Query Conservation																																.	.	.																															.	.
Alig confidence																																.	.	.																															.	.
Template Conservation
Template Sequence		G	D	D	I	V	E	F	G	F	E	H	V	I	T	A	T	G	A	T	W	R	T	D	G	V	A	R	F	H	T	T	A	L	P	I	A	E	G	M	Q	V	L	G	P	D	D	L	F	A	G	R	L	P	D	G	K	K	V	V	V	Y	D	D	D	H	Y	Y	L	G	G	V	V	A	E	L	L	A	Q	K	G
Template Known Secondary structure								T	T														S	S			S	S	S		S	S				B		T	T	S											T				S	S	S								S		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		C	Q	A	V	T	C	V	A	R	E	E	L	.	.	.	.	D	E	F	P	A	S	E	K	E	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V	E	G	N	K	V	T	F	K	H	V	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		Y	E	V	S	I	V	T	P	G	A	Q	V	S	S	W	T	N	N	T	F	E	V	N	R	I	Q	R	R	L	I	E	N	G	V	A	R	V	T	D	H	A	V	V	A	V	G	A	G	G	V	T	V	R	D	T	Y	A	S	I	E	R	E	L	E	C	D	A	V	V	M	V	T	A	R	L	P	R	E	E	L
Template Known Secondary structure									S	S	S	S	T	T	G	G	G	G	T	T	T												T	T						S								T	T							T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	E	L	E	P	Q	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	G	D	K	T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I	H	H	Y	L	E	G	A	C
Query Conservation
Alig confidence						.	.	.	.	.	.	.																					.
Template Conservation						.	.	.	.	.	.	.																					.
Template Sequence		Y	L	D	L	.	.	.	.	.	.	.	V	A	R	R	D	A	G	E	I	A	S	V	R	G	I	G	D	A	W	A	.	P	G	T	I	A	A	A	V	W	S	G	R	R	A	A	E	E	F	D	A	V	L	P	S	N	D
Template Known Secondary structure						.	.	.	.	.	.	.					T	T	T	S		S						G	G	G	T	S	.																		T	T						T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.																					.
Template SS confidence
		629	630	.	.								.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.		.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions