Job Description P76440 Confidence 100.00% Date Thu Jan 5 12:23:00 GMT 2012 Rank 26 Aligned Residues 245 % Identity 23% Template c3iwaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris Resolution 2.30 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		G	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	.	.	G	Y	D	V	T	I	Y	E	K	E	A	H	P	G	G	W	L	R	N	G	I	P	Q	F	R	L	P	Q	S	V	L	D	A	E	I	A	R	I	E	K	M	G	V	T	I	K	C	N	N	E	V	G	N	T	L	T
Query Conservation																								.	.
Alig confidence																								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	V	V	V	I	G	A	V	A	L	G	P	K	A	A	C	R	F	K	R	L	D	P	E	A	H	V	T	M	I	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	E	A	L	V	E	T	R	A	H	A	I	D	R
Template Known Secondary structure										S	S														T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S								T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																																	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
		203	.	.	.	.													.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Query Sequence		L	E	Q	L	K	.	.	.	.	.	.	.	.	.	.	.	.	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	D	V	E	I	A	V	D	F	L	Q	R	A	R	Q	A	Q	G	D	I	S	I	.	.	P	Q	S	A	L	I	I	G	G	G	D	V	A	M	D	V
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Template Conservation
Template Sequence		A	A	H	T	V	E	I	E	N	L	R	T	G	E	R	R	T	L	K	Y	D	K	L	V	L	A	L	G	S	K	A	N	R	P	P	V	E	G	M	D	L	A	G	V	T	P	V	T	N	L	D	E	A	E	F	V	Q	H	A	I	S	A	G	E	V	S	K	A	V	I	V	G	G	G	F	I	G	L	E	M
Template Known Secondary structure		T	T	T							T	T	T									S														S		T	T	T	T	S	B	T						S													T	T	S		S								S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		A	S	T	L	K	V	L	G	C	Q	A	V	T	C	V	A	R	E	E	L	D	E	F	P	A	S	E	K	E	F	T	S	.	.	.	.	.	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V	E	G	N	K	V	T	F	K	H	V	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.																												.
Template Conservation																																																																		.
Template Sequence		A	V	S	L	A	D	M	W	G	I	D	T	T	V	V	E	L	A	D	Q	I	M	P	G	F	T	S	K	S	L	S	Q	M	L	R	H	D	L	E	K	N	D	V	V	V	H	T	G	E	K	V	V	R	L	E	G	E	N	G	K	V	A	R	V	.	I	T	D	K	R	T	L	D	A	D	L	V	I	L	A
Template Known Secondary structure																		S	S	S	S	S	S	T	T	T	S															T	T						S									S	S	S	B					.			S	S						S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		344	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.											.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure													.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	Q	H	A	R	L	D	A	F	A	.	.	.	.	E	L	E	P	Q	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	G	D	.	.	.	.	.	.	.	.	.	.	K	T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I
Query Conservation													.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	V	S	P	N	T	Q	L	A	R	D	A	G	L	E	L	D	P	R	G	A	I	I	V	D	T	R	M	R	T	S	D	P	D	I	F	A	G	G	D	C	V	T	I	P	N	L	V	T	G	K	P	G	F	F	P	L	G	S	M	A	N	R	Q	G	R	V	I	G	T	N	L
Template Known Secondary structure		S													T			B		T	T							T	T		B		S	S	T	T					G	G	G					B	T	T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions