Job Description P76440 Confidence 99.98% Date Thu Jan 5 12:23:00 GMT 2012 Rank 42 Aligned Residues 277 % Identity 18% Template c1zmcG_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+ Resolution 2.53 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.																												.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	G	Y	D	V	T	I	Y	E	K	E	A	H	P	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	R	N	G	I	P	Q	F	R	L	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	T	V	I	G	S	G	P	G	G	Y	V	A	A	I	K	A	A	Q	L	G	F	K	T	V	C	I	E	K	N	E	T	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	N	N	S	H	Y	Y	H	M	A	H	G	T	D	F	A	S	R	G	I	E	M	S	E	V	R	L	N	L	D	K
Template Known Secondary structure									S														T									S	S	S	S	S							S																			S					T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
										173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																						.	.
Query SS confidence		.	.	.	.	.	.	.	.																																						.	.
Query Sequence		.	.	.	.	.	.	.	.	P	Q	S	V	L	D	A	E	I	A	R	I	E	K	M	G	V	T	I	K	C	N	N	E	V	G	N	T	L	T	L	E	Q	L	K	A	E	.	.	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	D	V	E	I	A	V	D	F	L	Q	R
Query Conservation		.	.	.	.	.	.	.	.																																						.	.
Alig confidence		.	.	.	.	.	.	.	.																																						.	.
Template Conservation
Template Sequence		M	M	E	Q	K	S	T	A	V	K	A	L	T	G	G	I	A	H	L	F	K	Q	N	K	V	V	H	V	N	G	Y	G	K	I	T	G	K	N	Q	V	T	A	T	K	A	D	G	G	T	Q	V	I	D	T	K	N	I	L	I	A	T	G	S	E	V	T	P	F	P	G	I	T	I	D	E	D	T	I	V	S
Template Known Secondary structure																								T	T						S							T	T							T	T	S																						T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		A	R	Q	A	Q	G	D	I	S	I	P	Q	S	A	L	I	I	G	G	G	D	V	A	M	D	V	A	S	T	L	K	V	L	G	C	Q	A	V	T	C	V	A	R	E	E	L	D	E	F	P	A	S	E	.	.	.	.	K	E	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V	E
Query Conservation																																																							.	.	.	.
Alig confidence																																																							.	.	.	.
Template Conservation
Template Sequence		S	T	G	A	L	S	L	K	K	V	P	E	K	M	V	V	I	G	A	G	V	I	G	V	E	L	G	S	V	W	Q	R	L	G	A	D	V	T	A	V	E	F	L	G	H	V	G	G	V	G	I	D	M	E	I	S	K	N	F	Q	R	I	L	Q	K	Q	G	F	K	F	K	L	N	T	K	V	T	G	A	T
Template Known Secondary structure						T	T		S	S			S								S													T	T								S	S	S	S	S	S		T	T																	T						S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.							.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																												.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																												.	.	.	.	.	.
Query Sequence		G	N	K	V	T	F	K	H	V	.	.	.	.	.	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A	F	A	.	.	.	.	.	.	E	L	E	P	Q	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	G	D	K	T
Query Conservation											.	.	.	.	.																												.	.	.	.	.	.
Alig confidence											.	.	.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	S	D	G	K	I	D	V	S	I	E	A	A	S	G	G	K	A	E	V	I	T	C	D	V	L	L	V	C	I	G	R	R	P	F	T	K	N	L	G	L	E	E	L	G	I	E	L	D	P	R	G	R	I	P	V	N	T	R	F	Q	T	K	I	P	N	I	Y	A	I	G	D	V	V	A	G	P	M	L
Template Known Secondary structure				T	T	S									T	T	S									S													T	T	S	S					T					T	T	S						T	T		B		S	S	T	T					G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	H	K	A	E	D	E	G	I	I	C	V	E	G	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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