Job Description P76440 Confidence 99.97% Date Thu Jan 5 12:23:00 GMT 2012 Rank 61 Aligned Residues 280 % Identity 18% Template c1m6iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif) Resolution 1.80 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.																										.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	T	L	G	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	G	Y	.	.	D	V	T	I	Y	E	K	E	A	H	P	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	R	N	G	I	P	Q	F	R	L	P
Query Conservation																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	P	N	V	T	K	T	L	R	F	K	Q	W	N	G	K	E	R	S	I	Y	F	Q	P	P	S
Template Known Secondary structure				S								S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G				T										T	T	S					S	B	S	S		G	G
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		Q	S	V	L	D	A	E	I	A	R	I	E	K	M	G	V	T	I	K	C	N	N	E	V	G	N	T	L	T	L	E	Q	.	.	.	.	.	.	.	L	K	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	.	.	.	.	D	V	E	I	A	V	D	F	L	Q	R
Query Conservation																																		.	.	.	.	.	.	.																											.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		F	Y	V	S	A	Q	D	L	P	H	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	Q	L	D	V	R	D	N	M	V	K	L	N	D	G	S	Q	I	T	Y	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K	S	R	T	T	L	F	R	K	I	G	D
Template Known Secondary structure		G	S	B		T	T	T	T	T	T	S	T	T								T								G	G	G	T					T	T	S																								T	S							T						S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																				.	.	.																		.	.	.	.	.
Query SS confidence																																				.	.	.																		.	.	.	.	.
Query Sequence		A	R	Q	A	Q	G	D	I	S	I	P	Q	S	A	L	I	I	G	G	G	D	V	A	M	D	V	A	S	T	L	K	V	L	G	.	.	.	C	Q	A	V	T	C	V	A	R	E	E	L	D	E	F	P	A	.	.	.	.	.	S	E	K	E	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P
Query Conservation																																				.	.	.																		.	.	.	.	.
Alig confidence																																				.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		F	R	S	L	E	K	I	S	R	E	V	K	S	I	T	I	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	A	R	A	L	G	T	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	E	Y	L	S	N	W	T	M	E	K	V	R	R	E	G	V	K	V	M	P	N	A	I	V
Template Known Secondary structure													S								S																		T								S	S	S	S	T	T	T	T	T	S														T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																											.	.	.	.	.																													.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.																													.	.	.	.	.	.
Query Sequence		V	A	V	E	G	N	K	V	T	F	K	H	V	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A	F	A	E	.	.	.	.	.	L	E	P	Q	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.																													.	.	.	.	.	.
Alig confidence													.																														.	.	.	.	.																	.												.	.	.	.	.	.
Template Conservation													.																																																			.
Template Sequence		Q	S	V	G	V	S	S	G	K	L	L	.	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	A	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E	I	D	S	D	F	G	G	F	R	V	N	A	E	L	Q	A	R	.	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L
Template Known Secondary structure								T	T				.				T	T	S						S													T	T					T			B		T	T	T		S					T	T					.	T	T					G	G	G						T	T	T
Template Predicted Secondary structure													.																																																			.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
					384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	D	K	T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions