Job Description P76440 Confidence 100.00% Date Thu Jan 5 12:23:00 GMT 2012 Rank 4 Aligned Residues 328 % Identity 19% Template c1hyuA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: crystal structure of intact ahpf Resolution 2.00 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	N	N	A	L	G	A	V	C	A	R	V	C	P	T	E	K	L	C	Q	S	G	C	T	R	A	G	V	D	A	P	I	D	I	G	R	L	Q	R	F	V	T	D	F	E	Q	Q	T	G	M	E	I	Y	Q	P	G	T	K	T	L	G	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	T	E	R	N	V	M	G	V	P	A	V	F	V	N	G	K	E	F	G	Q	G	R	M	T	L	T	E	I	V	A	K	V	D	T	G	A	E	K	R	A	A	.	.	.	.	.	.	.	.	.	.	.	E	A	L	N	K	R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	V	Y
Template Known Secondary structure						T	T			S	S	S					T	T						S														S	S						.	.	.	.	.	.	.	.	.	.	.					T	S											S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.												.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		143	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200													.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	N	Q	G	Y	D	V	T	I	Y	E	K	E	.	.	.	.	.	A	H	P	G	G	W	L	R	N	G	I	P	Q	F	R	L	P	Q	S	V	L	D	A	E	I	A	R	I	E	K	M	G	V	T	I	K	C	N	N	E	V	G	N	T	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	E	Q
Query Conservation																.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	R	K	G	I	R	T	G	L	M	G	E	R	F	G	G	Q	V	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	A	H	V	S	D	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	V	P	A	A	T	E	G	G	L	H	Q	I	E	T	A	S	G
Template Known Secondary structure					T	T								S	S	T	T	G	G	G	T	T		S		B			B	T	T	B	S	S	B															T	S							S										S	S	T	T	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	D	V	E	I	A	V	D	F	L	Q	R	A	R	Q	A	Q	G	D	I	S	I	P	Q	S	A	L	I	I	G	G	G	D	V	A	M	D	V	A	S	T	L	K	V	L	G	C	Q	A	V	T	C	V	A	R
Query Conservation
Alig confidence																											.	.	.																																														.
Template Conservation																											.	.	.																																														.
Template Sequence		A	V	L	K	A	R	S	I	I	I	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	.	.	.	Q	Y	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	.	V	T	L	L	E	F
Template Known Secondary structure																							T	T	T	T	.	.	.	T	T	T	T	T	T					T	T			G	G	G	G	B	T	S								S														B	S		.						S
Template Predicted Secondary structure																											.	.	.																																														.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.
Predicted Secondary structure																																											.	.	.	.	.																													.	.	.
Query SS confidence																																											.	.	.	.	.																													.	.	.
Query Sequence		E	E	L	D	E	F	P	A	S	E	K	E	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V	E	G	N	K	V	T	F	K	H	.	.	.	.	.	V	R	L	S	G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A	F	A	.	.	.	E	L	E
Query Conservation																																											.	.	.	.	.																													.	.	.
Alig confidence						.																																					.	.	.	.	.																													.	.	.
Template Conservation						.
Template Sequence		A	P	E	M	.	K	A	D	Q	V	L	Q	D	K	V	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	S	V	A	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	H	W	L	E	G	A	L	E	R	N
Template Known Secondary structure		S	S	S		.		S									T	T		T	T						S										S	S	S									T	T	T									S											S		G	G	G	T	T	T	S		B
Template Predicted Secondary structure						.
Template SS confidence
		387	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		P	Q	R	N	T	I	K	T	Q	N	Y	Q	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	G	D	.	K	T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I	H	H	Y	L
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		R	M	G	E	I	I	I	D	A	K	C	E	T	S	V	K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F	D	Y	L
Template Known Secondary structure		T	T	S		B				T	T		B		S	S	T	T					S	T	T	B			S	S
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions