Job Description P76440 Confidence 99.97% Date Thu Jan 5 12:23:00 GMT 2012 Rank 72 Aligned Residues 284 % Identity 17% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																.																																					.	.
Query SS confidence																										.	.																.																																					.	.
Query Sequence		L	G	K	V	A	I	I	G	A	G	P	A	G	L	Q	A	S	V	T	L	T	N	Q	G	.	.	Y	D	V	T	I	Y	E	K	E	A	H	P	G	G	W	.	L	R	N	G	I	P	Q	F	R	L	P	Q	S	V	L	D	A	E	I	A	R	I	E	K	M	G	V	T	I	K	C	N	N	E	V	G	.	.
Query Conservation																										.	.																.																																					.	.
Alig confidence																										.	.																.																																					.	.
Template Conservation
Template Sequence		G	R	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	Y	D	G	L	R	A	H	G	I	Q	V	V	H	D	S	A	T	G	I	D
Template Known Secondary structure											S	T	T										T	T		T	T	S							S		S	S				S	T	T	T						T	S	S		G	G	G	G				S						T	T						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
						199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.	.																																				.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence		.	.	.	.																																				.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		.	.	.	.	N	T	L	T	L	E	Q	L	K	A	E	N	R	A	V	L	V	T	V	G	L	S	S	G	S	G	L	P	L	F	E	H	S	D	V	.	.	.	.	.	.	.	E	I	A	V	D	F	L	Q	R	A	R	Q	A	Q	G	D	I	S	I	P	Q	S	A	L	I	I	G	G	G	.	.	.	.	.
Query Conservation		.	.	.	.																																				.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence		.	.	.	.																																				.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		P	D	K	K	L	V	K	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V	I	A	P	P	A	A	P	F	R	C
Template Known Secondary structure			T	T	T						T	S						S													T	T	S	T	T			T	T	G	G	G	T	S					S														S	S		T	T										S	S		B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
							263	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure		.	.	.	.	.															.														.	.	.	.	.	.
Query SS confidence		.	.	.	.	.															.														.	.	.	.	.	.
Query Sequence		.	.	.	.	.	D	V	A	M	D	V	A	S	T	L	K	V	L	G	.	C	Q	A	V	T	C	V	A	R	E	E	L	D	.	.	.	.	.	.	E	F	P	A	S	E	K	E	F	T	S	A	R	E	L	G	V	S	I	I	D	G	F	T	P	V	A	V	E	G	N	K	V	T	F	K	H	V	R	L	S
Query Conservation		.	.	.	.	.															.														.	.	.	.	.	.
Alig confidence		.	.	.	.	.															.														.	.	.	.	.	.																																					.
Template Conservation																																																																													.
Template Sequence		P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	M	.	V	E	T	A
Template Known Secondary structure		T	T																		T	T								S		S	S		T	T														T	T	T	T	T		S						T	T	T	T				S				T	T	T		.				T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.		.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																											.	.	.													.			.																.	.	.
Query SS confidence																											.	.	.													.			.																.	.	.
Query Sequence		G	E	L	T	M	A	A	D	K	I	I	L	A	V	G	Q	H	A	R	L	D	A	F	A	E	.	.	.	L	E	P	Q	R	N	T	I	K	T	Q	N	.	Y	Q	.	T	R	D	P	Q	V	F	A	A	G	D	I	V	E	G	.	.	.	D	K	T	V	V	Y	A	V	K	T	G	K	E	A	A	E	A	I
Query Conservation																											.	.	.													.			.																.	.	.
Alig confidence																					.						.	.	.													.			.																.	.	.
Template Conservation																					.
Template Sequence		F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	.	K	I	A	Q	I	A	G	L	T	N	D	A	G	W	C	P	V	D	I	K	T	F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V
Template Known Secondary structure		T							S												.							T			B	T	T	T	B	B		B		S	S	S		B	B	S	S	S	T	T					G	G	G	B			S	S	S		B	S
Template Predicted Secondary structure																					.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		403	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	Y	L	E	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	L	K	G	E
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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